Deprecated API

Deprecated Interfaces

uk.ac.ic.doc.automed.Constants
use constants in individual classes instead, such as Construct .CLASS_MINIMUM instead of CONSTRUCT_CLASS_MINIMUM

Deprecated Fields

uk.ac.ic.doc.automed.reps.Scheme.HDM_TYPE_N1

uk.ac.ic.doc.automed.reps.Scheme.HDM_TYPE_N2

uk.ac.ic.doc.automed.reps.Scheme.HDM_TYPE_P1

uk.ac.ic.doc.automed.reps.Scheme.HDM_TYPE_P2

uk.ac.ic.doc.automed.reps.Scheme.TYPE_ALTERNATION
see Construct.CLASS_ALTERNATION

uk.ac.ic.doc.automed.reps.Scheme.TYPE_SEQUENCE
see Construct.CLASS_SEQUENCE

Deprecated Methods

uk.ac.ic.doc.automed.STR.copySchemaObject(int, int)
contents of intentional schemas will no longer be stored in the STR. The materialization code does not use this method. This method is called when the contents of an intentional schema are being materialized. The temporary copy of the object has the same OBID as the original, it just exists in the new SID as well as the original (via the objectSchema table).

uk.ac.ic.doc.automed.reps.Construct.createConstructScheme(int, Construct, boolean, int, int, int)
See the addXxxScheme() methods Creates a new ConstructScheme for the construct.

uk.ac.ic.doc.automed.reps.TransformationPathway.findShortestPath(Schema, Schema)
use findShortestPathway(Schema, Schema)

uk.ac.ic.doc.automed.reps.TransformationPathway.findShortestPath(String, String)
use findShortestPathway(String, String)

uk.ac.ic.doc.automed.reps.Network.getNode(Node)

uk.ac.ic.doc.automed.STR.getSTR_DataSourceName()
use getDataSourceName()

uk.ac.ic.doc.automed.STR.isSchemaCached(int)
the isCached field in the schema table is no longer in use. Determines whether or not the objects of the specified schema are cached.

uk.ac.ic.doc.automed.STR.isSchemaObjectTemp(int, int)
the isTemp field in the object table is no longer in use. Determines whether or not the schema object is temporary.

uk.ac.ic.doc.automed.reps.Construct.removeConstructFromMap(Construct)
Remove constructs using @link remove() which will also do the job of this method Removes from the HashMap that holds the CID and ref to all Construct objs.

uk.ac.ic.doc.automed.reps.SchemaObject.removeSchemaObjectFromMap(SchemaObject)
use @link remove() to remove SchemaObjects Removes a SchemaObject object from the schema object HashMap.

uk.ac.ic.doc.automed.ModelDefinitionsRepository.setMDR_DataSourceName(String)
use setDataSourceName()

uk.ac.ic.doc.automed.STR.setSchemaCached(int, boolean)
the isCached field in the schema table is no longer in use.

uk.ac.ic.doc.automed.STR.setSTR_DataSourceName(String)
use setDataSourceName()