A B C D E F G H I J L M N O P Q R S T U V W _

A

absolute(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
 
AccessMethod - class uk.ac.ic.doc.automed.reps.AccessMethod.
The AccessMethod class describes how a particular database presented by a Schema can be accessed by an AutoMed application, using a particular Protocol.
action - Variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
ACTION_ADD - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "add"
ACTION_CONTRACT - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "contract"
ACTION_DELETE - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "delete"
ACTION_EXTEND - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "extend"
ACTION_IDENT - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "ident"
ACTION_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
action_obj - Variable in class uk.ac.bbk.dcs.automed.qproc.QParser
Instance of action encapsulation class.
ACTION_RENAME - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "rename"
action_table() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Access to parse-action table.
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaTool
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.gui.LoadDialog
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.gui.IntegrateDialog
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.gui.ArgumentsDialog
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.gui.ArgPane
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.UserAction
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperGUI
 
ADD - Static variable in class uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort of addition to the repository.
add(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the sum of two AutoMedFloats.
add(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the sum of two AutoMedIntegers.
add(int, ModelingStatement) - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Inserts the specified statement at the specified position(program counter) in this program.
add(ModelingStatement) - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Appends the specified statement to the end of this ModelingProgram.
addArrayToList(Object[], List) - Static method in class uk.ac.ic.doc.automed.Util
Adds in order all elements in the source array to the destination List and returns the destination list so that the method can be used as an argument to a method call.
addAutoMedTuple(AutoMedTuple) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Assert that a certain row number exists in a result
addCommand(String, Class, String) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
Looks for a public method with the signature doCommand(String[] args) in the class methodClass and adds it to the commands that can be invoked from the CLI.
addConstraint(HDMConstraint) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
addConstraintScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Constraint schemes can only be added to constructs of type Nodal, Link-Nodal, Link or Constraint Defaults to isKey = true, 1..1
addConstraintScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addConstraintScheme(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addConstraintScheme(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addEdgeNameScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
EdgeName schemes can only be added to LINK and LINK-NODAL construct types.
addEdgeNameScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addElement(HDMElement) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
addLabelScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Label schemes are scheme arguments that have no corresponding HDM (except maybe through automatic HDM node and edge names if the label is defined as key for its construct) Defaults to isKey = true, 1..1
addLabelScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addLabelScheme(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addLabelScheme(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addLayoutComponent(String, Component) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
addNodeNameScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
NodeName schemes can only be added to NODAL and LINK-NODAL construct types.
addNodeNameScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addNodeNameScheme(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addNodeNameScheme(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addPrefix(String, String) - Static method in class uk.ac.ic.doc.automed.Util
Adds the prefix to the beginning of each line in message
addReferenceScheme(Construct) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReferenceScheme(Construct, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReferenceScheme(Construct, int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReferenceScheme(Construct, int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReloadHook(Method) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
addTran(Transformation) - Method in class uk.ac.ic.doc.automed.reps.TransformationPathway
 
addVertex(HDMElement) - Method in class uk.ac.ic.doc.automed.reps.HDMEdge
 
ALIAS - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Define an alias of a table.
AMQfromIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator
 
AMQfromIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.wrappers.Translator
 
AND - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
SQL logical AND binary operator for use within WHERE expressions
ANY - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
AnyToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
appearsInSchemeOf(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Determines whether or not the schema object appears anywhere in the scheme of another schema object.
Append - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
apply - Static variable in interface uk.ac.bbk.dcs.automed.qproc.Tags
 
apply(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.Optimiser
 
apply(Node) - Method in class uk.ac.bbk.dcs.automed.qproc.Rule
 
applyAddTransformation(Construct, Object[], String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an ADD transformation.
applyAddTransformation(Construct, Object[], String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an ADD transformation.
applyContractTransformation(SchemaObject, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a CONTRACT transformation.
applyContractTransformation(SchemaObject, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a CONTRACT transformation.
applyDeleteTransformation(SchemaObject, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a DELETE transformation.
applyDeleteTransformation(SchemaObject, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a DELETE transformation.
applyExtendTransformation(Construct, Object[], String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an EXTEND transformation.
applyExtendTransformation(Construct, Object[], String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an EXTEND transformation.
applyRenameTransformation(SchemaObject, Object[]) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a RENAME transformation.
applyRenameTransformation(SchemaObject, Object[], String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a RENAME transformation.
Arc - class uk.ac.ic.doc.automed.gui.Arc.
 
Arc() - Constructor for class uk.ac.ic.doc.automed.gui.Arc
 
areRelativesMaximal() - Method in class uk.ac.ic.doc.automed.reps.Network
 
ARG_ACTION_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for action
ARG_ARGSEQUENCES_IN_FOREACH - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the FOREACH_STATEMENT for argument sequence ID of the lists to iterate
ARG_ARGSINGLETONS_IN_FOREACH - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the FOREACH_STATEMENT for argument sequence ID of singleton arguments
ARG_ARGUMENTS_IN_INVOCATION - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the INVOCATION_STATEMENT for the argument sequnce ID
ARG_CID_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for CID(Construct ID)
ARG_CONSTRAINTS_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for constraints
ARG_FROMOBJ_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for FromObject OBID
ARG_FROMSCHEMA_IN_CONTRACT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the CONTRACT_STATEMENT for the initial schema ID
ARG_FROMSCHEMA_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for FromSchema SID
ARG_FUNCTION_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for function
ARG_ISTEMP_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for IsTemp
ARG_OBID_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for OBID(Object ID)
ARG_OBJECT_IN_CONTRACT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the CONTRACT_STATEMENT for object ID
ARG_RETURNED_ARGS_START_IN_FOREACH - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the FOREACH_STATEMENT where the returned argument sequences start
ARG_SCHEMA_IN_FOREACH - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the FOREACH_STATEMENT for current schema SID
ARG_SCHEME_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for the argument sequence ID of the object's scheme
ARG_SCHEMEID_IN_EXTGENSCHEME - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the EXTGENSCHEME_STATEMENT for the argument sequence ID of the generalisation's scheme
ARG_SCHEMEPOS_IN_EXTGENSCHEME - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the EXTGENSCHEME_STATEMENT for the position in the scheme where to start extending
ARG_SID_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for SID(Schema ID)
ARG_SUBENTITIES_IN_EXTGENSCHEME - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the EXTGENSCHEME_STATEMENT for the argument sequence ID of the sub-entities
ARG_TOOBJ_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for ToObject OBID
ARG_TOSCHEMA_IN_CONTRACT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the CONTRACT_STATEMENT for the final schema ID
ARG_TOSCHEMA_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for ToSchema SID
ARG_TRANS_IN_FOREACH - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the FOREACH_STATEMENT for template transformation ID
ARG_TRANSFORMATION_IN_INVOCATION - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the INVOCATION_STATEMENT for the template transformation's ID
ARG_VALUE_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for the object's value
ArgPane - class uk.ac.ic.doc.automed.gui.ArgPane.
Panel for defining an argument sequence.
ArgPane(String[]) - Constructor for class uk.ac.ic.doc.automed.gui.ArgPane
Creates a new ArgPane.
ArgumentsDialog - class uk.ac.ic.doc.automed.gui.ArgumentsDialog.
A dialog that can be used for the argument assignment.
ArgumentsDialog(Frame, ActionListener, String, boolean, String[]) - Constructor for class uk.ac.ic.doc.automed.gui.ArgumentsDialog
Creates a new ArgumentsDialog.
ArrowIcon - class uk.ac.ic.doc.automed.gui.ArrowIcon.
An icon that's a picture of an arrow.
ArrowIcon(int) - Constructor for class uk.ac.ic.doc.automed.gui.ArrowIcon
 
ASG - class uk.ac.bbk.dcs.automed.qproc.ASG.
 
ASG(File) - Constructor for class uk.ac.bbk.dcs.automed.qproc.ASG
 
ASG(Node) - Constructor for class uk.ac.bbk.dcs.automed.qproc.ASG
 
ASG(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.ASG
 
AT_LEAST_ONE - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
atDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.STR
Return true if the debug level set by STR.setDebugLevel(int) is at least at a certain level.
atDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Determine is debug is at or above a certain level.
atSectionDebugLevel(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Tests whether the section of code has been set to at least the debug level specified.
AUTOMED_SQL_MODEL_FIELD - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_FOREIGN_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_INDEX - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_PRIMARY_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_TABLE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AutoMedBoolean - class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean.
Provides generic representation boolean values.
AutoMedBoolean(boolean) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Create a new AutoMedBoolean
AutoMedBoolean(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Create a new AutoMedBoolean from a String value.
AutoMedException - exception uk.ac.ic.doc.automed.AutoMedException.
The class root of all AutoMed generated exceptions.
AutoMedException(String) - Constructor for class uk.ac.ic.doc.automed.AutoMedException
Creates an AutoMedException.
AutoMedFloat - class uk.ac.ic.doc.automed.wrappers.AutoMedFloat.
Provides generic representation of floating values with abritrary precision.
AutoMedFloat(BigDecimal) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Create a new AutoMedFloat from a BigDecimal.
AutoMedFloat(double, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Create a new AutoMedFloat from a 64 bit floating point value.
AutoMedFloat(float, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Create a new AutoMedFloat from a 32 bit floating point value.
AutoMedInteger - class uk.ac.ic.doc.automed.wrappers.AutoMedInteger.
Provides generic representation of integer values with up to 64 bit precision.
AutoMedInteger(int, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Create a new AutoMedInteger from a 32 bit integer value.
AutoMedInteger(long, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Create a new AutoMedInteger
AutoMedQuery - class uk.ac.ic.doc.automed.wrappers.AutoMedQuery.
A generic representation of query expressions as trees, where each AutoMedQuery has an operator type, and 0 or more fields that have a field type
AutoMedQuery(AutoMedQueryToken, Object[]) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
AutoMedQueryToken - class uk.ac.ic.doc.automed.wrappers.AutoMedQueryToken.
A generic representation of query langauge tokens
AutoMedResult - class uk.ac.ic.doc.automed.wrappers.AutoMedResult.
Provides a representation of the data associated with a scheme in an AutoMed Schema.
AutoMedResult(int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Create a new AutoMedResult with a fixed size of tuple in the resultCache
AutoMedString - class uk.ac.ic.doc.automed.wrappers.AutoMedString.
Provides generic representation of string values of abritrary size.
AutoMedString(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedString
Create a new AutoMedString
AutoMedTime - class uk.ac.ic.doc.automed.wrappers.AutoMedTime.
Provides generic representation of time values in GMT.
AutoMedTime(Date, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Create a new AutoMedTime
AutoMedTime(long, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Create a new AutoMedTime, measure as the number of milliseconds since 1st January 1970, 00:00:00 GMT
AutoMedTuple - class uk.ac.ic.doc.automed.wrappers.AutoMedTuple.
A structure to hold one tuple of data, to be used by AutoMedResult as the basis for storing sets, lists or bags of tuples.
AutoMedTuple(AutoMedResult, int, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Create a new tuple belonging to row i and with nc attributes
AutoMedType - class uk.ac.ic.doc.automed.wrappers.AutoMedType.
Provides a base for the representation of basic types supported by AutoMed.
AutoMedType() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedType
 
AutoMedWrapper - class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper.
An AutoMedWrapper represents an open connection to a datasource.
AutoMedWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
AutoMedWrapperFactory - class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory.
An AutoMedWrapperFactory class able to produce AutoMedWrapper instances, together with any data that the wrapper requires to be present in the repository.
AutoMedWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
AutoMedWrapperGUI - class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperGUI.
An AutoMedWrapperGUI provides a simple user interface to the the wrapper API, in particular allowing an AutoMedWrapper instance to be created form details of a data source.
AutoMedWrapperGUI.FrameUI - class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperGUI.FrameUI.
 
AutoMedWrapperGUI() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperGUI
 
AutoRepException - exception uk.ac.ic.doc.automed.reps.AutoRepException.
The class of exceptions generated by the uk.ac.ic.doc.automed.reps package.
AutoRepException(String) - Constructor for class uk.ac.ic.doc.automed.reps.AutoRepException
Creates an AutoRepException.
AutoRepException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.reps.AutoRepException
Creates an AutoRepException.

B

BadSchemaException - exception uk.ac.ic.doc.automed.reps.BadSchemaException.
The class of exceptions generated when the contents of an intentional schema materialized via a particular transformation pathway are not the same as those of the same schema materialized via its default transformation pathway (path to the cloesest extensional schema).
BadSchemaException(String, Schema) - Constructor for class uk.ac.ic.doc.automed.reps.BadSchemaException
Creates a BadSchemaException.
Bar - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
BINARY_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
BOOLEAN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
BOOLEAN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a boolean true/false value.
BOOLEAN_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
booleanValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Return a boolean representation of this AutoMedBoolean.
BoolToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
Box - class uk.ac.ic.doc.automed.gui.Box.
 
Box() - Constructor for class uk.ac.ic.doc.automed.gui.Box
 
build(String, String, String, String, String) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
build(String, String, String, String, String) - Method in class uk.ac.ic.doc.automed.wrappers.PostgresWrapperFactory
Create an AutoMed Schema containing SchemaObjects that represent a database, in such a form that queries on that schema can be mapped by executeQuery in the query lanuage of the database.
buildAutoMedWrapper(AccessMethod, String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperGUI
Build the appropriate wrapper for a given stored AccessMethod

C

caseCommand(String) - Static method in class uk.ac.ic.doc.automed.Util
converts the argument into lower case with the first letter in uppercase
checkEditable() - Method in class uk.ac.ic.doc.automed.reps.Schema
Checks whether a schema is editable.
checkIsWellformed() - Method in class uk.ac.ic.doc.automed.reps.TransformationPathway
 
cidExists(int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Checks if a particular construct identifier (CID) exists in the MDR.
CLASS_ALTERNATION - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct which acts as a place holder for one of list of alternative constructs.
CLASS_CONSTRAINT - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for constraints, i.e.
CLASS_LINK - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for linking constructs, i.e.
CLASS_LINK_NODAL - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for link-nodal constructs, i.e.
CLASS_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CLASS_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CLASS_NODAL - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for nodal constructs, i.e.
CLASS_SEQUENCE - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct which acts as a place holder for a list of constructs.
CLAUSE_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
clear() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Removes all of the statements from this ModelingProgram.
clearAccessMethods() - Static method in class uk.ac.ic.doc.automed.reps.AccessMethod
 
clearSchemas() - Static method in class uk.ac.ic.doc.automed.reps.Schema
This method empties all the cached Schema, SchemaObject, Transformation, AccessMethods and Protocols that have been cached.
clone() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Returns a deep copy of this ModelingProgram instance.
close() - Method in class uk.ac.ic.doc.automed.editor.Gui
 
Colon - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
Comma - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
CommandLineDriver - class uk.ac.ic.doc.automed.editor.CommandLineDriver.
 
CommandLineDriver() - Constructor for class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
CommandLineException - exception uk.ac.ic.doc.automed.editor.CommandLineException.
 
CommandLineException(String) - Constructor for class uk.ac.ic.doc.automed.editor.CommandLineException
 
compare(Object, Object) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
compare(Object, Object) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
compareTo(Object) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
compareTo(Object) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
CompositeTransformation - class uk.ac.ic.doc.automed.reps.CompositeTransformation.
The CompositeTransformation class.
CompositeTransformation(String, String, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.CompositeTransformation
Constructs a new CompositeTransformation without any argument definitions nor program.
ConfigException - exception uk.ac.ic.doc.automed.editor.ConfigException.
 
ConfigException(String) - Constructor for class uk.ac.ic.doc.automed.editor.ConfigException
 
ConfigException(String, int, String) - Constructor for class uk.ac.ic.doc.automed.editor.ConfigException
 
constant - Static variable in interface uk.ac.bbk.dcs.automed.qproc.Tags
 
Constants - interface uk.ac.ic.doc.automed.Constants.
Deprecated. use constants in individual classes instead, such as Construct .CLASS_MINIMUM instead of CONSTRUCT_CLASS_MINIMUM
Construct - class uk.ac.ic.doc.automed.reps.Construct.
The Construct class
CONSTRUCT_CLASS_CONSTRAINT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for constraints
CONSTRUCT_CLASS_LINK - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for linking constructs
CONSTRUCT_CLASS_LINK_NODAL - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for link-nodal constructs
CONSTRUCT_CLASS_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
CONSTRUCT_CLASS_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
CONSTRUCT_CLASS_NODAL - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for nodal constructs
CONSTRUCT_TYPE_ANY - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRUCT_TYPE_ARRAY - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRUCT_TYPE_REFERENCE - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
Construct(Model, int, String, int, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.Construct
Instantiates a Construct.
ConstructAny - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
ConstructArray - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
constructor - Static variable in interface uk.ac.bbk.dcs.automed.qproc.Tags
 
ConstructReference - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
ConstructScheme - class uk.ac.ic.doc.automed.reps.ConstructScheme.
The ConstructScheme class
ConstructScheme(int, int, int, Construct, boolean, int, int, int) - Constructor for class uk.ac.ic.doc.automed.reps.ConstructScheme
Instantiates a new ConstructScheme object.
ConstructSchemeSyntaxException - exception uk.ac.ic.doc.automed.reps.ConstructSchemeSyntaxException.
 
ConstructSchemeSyntaxException(String) - Constructor for class uk.ac.ic.doc.automed.reps.ConstructSchemeSyntaxException
 
ConstructWithModelingProgram - class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram.
The class describing Construct objects together with their graphical representations/ModelingProgram objects
ConstructWithModelingProgram(Model, int, String, int, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
Creates a new Construct.
contains(Node) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns whether or not the network contains the supplied node.
contains(Point) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
contains(Point) - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
contains(Point) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
contains(Schema) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns whether or not the network contains the supplied schema
contains(String) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns whether or not the network contains the named schema
CONTRACT_STATEMENT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Statement to contract an object
copyOfASG() - Method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
copyOfGraph() - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
copySchemaObject(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Deprecated. contents of intentional schemas will no longer be stored in the STR. The materialization code does not use this method. This method is called when the contents of an intentional schema are being materialized. The temporary copy of the object has the same OBID as the original, it just exists in the new SID as well as the original (via the objectSchema table).
createAccessMethod(int, String, int, String, String) - Static method in class uk.ac.ic.doc.automed.STR
Add the access methods of a schema to the STR.
Precondition: The schema whose access methods are being added must already exist in the schemas table.
createAccessMethod(Schema, String, Protocol, String, String) - Static method in class uk.ac.ic.doc.automed.reps.AccessMethod
Creates a new access method.
createAddTransformation(Schema, Construct, Object[], String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a new ADD transformation.
createAddTransformation(Schema, Construct, Object[], String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an ADD transformation.
createArc() - Static method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
createArgument(int, int) - Method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Constructs a new TemplateArgument and adds it to this TemplateArgumentSequence.
createArgument(int, int, int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Adds a new argument to a sequence of arguments
createArgument(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Adds a new argument to a sequence of arguments
createArgument(int, String) - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence
Constructs a new RuntimeArgument and adds it to this RuntimeArgumentSequence.
createArgument(int, String) - Method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Constructs a new TemplateArgument and adds it to this TemplateArgumentSequence.
createArgument(int, TemplateArgument) - Method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Constructs a new TemplateArgument and adds it to this TemplateArgumentSequence.
createArgument(int, TemplateArgumentSequence, int) - Method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Constructs a new TemplateArgument and adds it to this TemplateArgumentSequence.
createArgumentDefinition(int, String, boolean) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Defines an argument for this CompositeTransformation.
createArgumentDefinition(int, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Statement
Defines an argument for this Statement.
createArgumentDefinition(int, String, String, String, boolean) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Defines an argument for this CompositeTransformation.
createArgumentSequence(Vector) - Method in class uk.ac.ic.doc.automed.gui.SchemaTool
 
createAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Define a relational modelling language for the SQL standard which is an "AutoMed" oriented modelling language..
createAutoMedSchema(String) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Create an AutoMed standard relational schema from the source oriented schema.
createBox() - Static method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
createComponents() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperGUI
 
createCompositeTransformation(String, String, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Adds a new composite transformation to the TTR.
createCompositeTransformationDefinition(int, int, String, String, String, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Adds a new argument to the composite transformation's definition of arguments.
createCompositeTransformationExecution(int, int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Adds a statement to the composite transformation's execution
createCompositeTransformationInvocation(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Creates a composite transformation's invocation
createCompositeTransformationProgram(int, int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Adds a new statement to a composite transformation's program
createCompositeTransformationReturnedValuesDefinition(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Defines where the transformation's returned values are stored.
createConstruct(int, String, int, boolean) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Creates a new construct for a modelling language
createConstruct(String, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Model
Creates a new construct and add to the model.
createConstructModeling(int, int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Adds a new method invocation to a construct's modeling program
createConstructScheme(int, Construct, boolean, int, int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
Deprecated. See the addXxxScheme() methods Creates a new ConstructScheme for the construct.
createConstructScheme(int, int, int, boolean, int, int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Creates a new constructScheme argument for a construct
createContractTransformation(Schema, SchemaObject, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an CONTRACT transformation.
createContractTransformation(Schema, SchemaObject, String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an CONTRACT transformation.
createDefaultSchema(Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Creates a new schema and appends it to the STR.
createDeleteTransformation(Schema, SchemaObject, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a DELETE transformation.
createDeleteTransformation(Schema, SchemaObject, String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a DELETE transformation.
createExtendTransformation(Schema, Construct, Object[], String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an EXTEND transformation.
createExtendTransformation(Schema, Construct, Object[], String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an EXTEND transformation.
createFirstArgument(int, int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Creates a new sequence of arguments and adds a new argument to the sequence
createFirstArgument(int, String) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Creates a new sequence of arguments and adds a new argument to the sequence
createFirstArgument(int, String, Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Creates a new sequence of arguments and adds a new argument to the sequence
createFromTMLPathway(TMLPathway) - Static method in class uk.ac.ic.doc.automed.reps.TransformationPathway
 
createIdentTransformations(Schema, Schema, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an IDENT transformation.
createIntSchema(String) - Static method in class uk.ac.ic.doc.automed.STR
Adds an intentional schema to the STR.
Returns an integer that specifies the schema identifier (SID) assigned to the new schema.
createLine() - Static method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
createMethod(String, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Adds a new method to the SMR.
createMethodArgument(int, int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Adds a new argument to the method's arguments.
createModel(String) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Creates a new data modelling language which can then have constructs added.
createModel(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
Creates a new model with the given name.
createObjectScheme(int, int) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Creates the scheme for a schema object and appends it to the STR.
createPrimitiveTransformation(int) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Creates a primitive transformation and appends it in the STR.
createProtocol(String) - Static method in class uk.ac.ic.doc.automed.STR
Add the given protocol to the STR.
createProtocol(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Creates a new protocol.
createRenameTransformation(Schema, SchemaObject, Object[]) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a RENAME transformation.
createRenameTransformation(Schema, SchemaObject, Object[], String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a RENAME transformation.
createReturnedArgumentsDefinition(TemplateArgumentSequence) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Defines the values of the arguments that store returned values after the transformation's invocation.
createRhombus() - Static method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
createSchema(String, boolean) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Creates a new schema.
createSchema(String, boolean, boolean, boolean) - Static method in class uk.ac.ic.doc.automed.STR
Adds a new schema to the STR.
createSchema(String, boolean, boolean, boolean, boolean) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Creates a new schema.
createSchemaObject(Construct, Object[]) - Method in class uk.ac.ic.doc.automed.reps.Schema
Creates a schema object.
createSchemaObject(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Adds a new schema object to the STR.
createSchemaObject(int, Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Creates a new schema object and appends it to the STR.
createSchemaObject(Schema, Construct, Object[]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Creates a new schema object.
createSchemaObjectFromDB(int, Schema) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Instantiates a SchemaObject whose record already exists in the STR.
createScheme(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Adds a scheme to the STR.
createSQLModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Define a relational modelling language for the SQL standard, together with the JDBC protocol for accessing SQL compliant databases.
createStatement(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Adds a new statement to the TTSR.
createStatementDefinition(int, int, String, String, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Adds a new argument definition to the statement's definitions of arguments.
createStatementExecution(int, Statement, TemplateArgumentSequence) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Defines the statement to be invoked at a particular program counter.
createTransformation(String, int, int, int, int, String, String) - Static method in class uk.ac.ic.doc.automed.STR
Adds a transformation to the STR.

D

DATA_SIZE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
DATA_TYPE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
data() - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
DataSourceException - exception uk.ac.ic.doc.automed.wrappers.DataSourceException.
Generated when some problem occurs when accessing a data source, such as the wrong password being supplied.
DataSourceException(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.DataSourceException
Creates an DataSourceException when there has been no Exception that caused the error to discovered.
DataSourceException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.wrappers.DataSourceException
Creates an DataSourceException when it is acting as a wrapper for other Exceptions.
DataSourceRepository - class uk.ac.ic.doc.automed.DataSourceRepository.
Reads data source definitions from a configuration file and provides methods to get a Connection for a data souce.
DataSourceRepositoryException - exception uk.ac.ic.doc.automed.DataSourceRepositoryException.
The class of exceptions generated by DataSourceRepository.
DataSourceRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.DataSourceRepositoryException
 
DATE_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
dateValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 
DAY - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one day
debugPrintStackTrace(Throwable, int) - Static method in class uk.ac.ic.doc.automed.STR
Print an throwable's stack trace, but only at a certain debug level
DELETE - Static variable in class uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort of deletion from the repository.
Difference - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
differenceByName(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an SchemaObject array containing the difference by name between this schema (s1) and the schema passed as a parameter (s2).
dispatchCommand(String) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
dispatchCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
Invokes the method registered for the command args[0] with #addCommand(String, Class).
divide(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the division of two AutoMedFloats.
divide(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the division of two AutoMedIntegers.
do_action(int, lr_parser, Stack, int) - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Invoke a user supplied parse action.
doCreateCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
doCreatedbCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
Reads the property CreateDB property for the data source and executes the value as an update on the databse connection
doDefaultCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
doDisplayCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
doDropdbCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
doExitCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
doGetCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
doGetCurrentModelCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetModelsCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetNetworkCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetNetworkNamesCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetNetworksCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetSchemaNetworkCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doHelpCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
doHelpCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
doIsCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
doListSchemaCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doPopulatedbCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
doPrintCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
doPrintNetworkCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doQuitCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
doReloadCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
doRemoveCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
doSetCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
DOUBLE_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the value of this AutoMedFloat as an double
draw() - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
draw() - Method in class uk.ac.ic.doc.automed.gui.Line
 
draw() - Method in class uk.ac.ic.doc.automed.gui.Box
 
draw() - Method in class uk.ac.ic.doc.automed.gui.Arc
 
Drawable - interface uk.ac.ic.doc.automed.editor.Drawable.
 
drawMap(String[][]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
drawMap(String[][], boolean) - Static method in class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
duplicateTransformation(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a duplicate of the transformation.

E

Editor - class uk.ac.ic.doc.automed.editor.Editor.
 
Editor(String[]) - Constructor for class uk.ac.ic.doc.automed.editor.Editor
 
EditorException - exception uk.ac.ic.doc.automed.editor.EditorException.
 
EditorException(String) - Constructor for class uk.ac.ic.doc.automed.editor.EditorException
 
EditorPanel - class uk.ac.ic.doc.automed.editor.EditorPanel.
 
EditorPanel(Map, Gui.EditorFrame) - Constructor for class uk.ac.ic.doc.automed.editor.EditorPanel
 
emptyQuery() - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
EOF - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
EOF_sym() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
EOF Symbol index.
Equal - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
EQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
SQL equality predicate for use within WHERE expressions
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedString
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Test two AutoMedTypes for equality, performing conversions as appropriate.
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
 
equals(Object) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
equals(Object) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
equals(Object) - Method in class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
error - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
error_sym() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
error Symbol index.
exactlyTwo(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
executeContractStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector, Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Executes a contract statement.
executeExtGenSchemeStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector, Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Executes a extend_gen_scheme statement.
executeForEachStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector, Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Executes a foreach statement.
executeInvocationStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector, Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Executes a transformation_invocation statement.
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
Execute an IQL query on the datasource.
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
executeNewObjectStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector, Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Executes a new_object statement.
executePrimitiveTransformationStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector, Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Executes a primitive_transformation statement.
executeSQLQuery(SQLQuery) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
executeSQLQuery(SQLQuery) - Method in class uk.ac.ic.doc.automed.wrappers.PostgresWrapper
Execute a query on the data source, returning the result in the standard format for instances of SQL queries.
executeStatement(String, Connection, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatement(String, Connection, OutputStream, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatement(String, Connection, Writer) - Static method in class uk.ac.ic.doc.automed.Util
Executes the sql statement on the JDBC Concection and returns either a ResultSet, an Integer representing the update count or an SQLException if thrown when executing the command.
executeStatement(String, Connection, Writer, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatement(String, String, boolean) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
executeStatement(String, String, boolean, Set) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
executeStatements(String, String, boolean) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
executeStatements(String, String, boolean, Set) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
executeStatements(String, String, Connection, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatements(String, String, Connection, OutputStream, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatements(String, String, Connection, Writer) - Static method in class uk.ac.ic.doc.automed.Util
Calls {link #executeStatement(String, Connection, Writer)} with each each statement in sql seperated by del.
executeStatements(String, String, Connection, Writer, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeTransformation(int, int, String[], HashMap, int, String[], String[], Vector, Vector, Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Main method which executes a composite transformation.
exists(int) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
exists(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Determine if a given named protocol exists in the repository
exists(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns true is the named schema exists
exists(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
exitCommandLine() - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
exitCommandLine(int) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
exitHelp - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
exitSyntax - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
exportConstructs(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Model
 
exportConstructs(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Model
 
exportSchemaObjects(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
exportSchemaObjects(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
exportSchemes(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
exportSchemes(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
extendToMatch(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Create a new Schema which contains the same set of constructs as the current schema, plus all those constructs of another schema, which are defined via extend operators.
EXTGENSCHEME_STATEMENT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Statement to extend an ER generalization's scheme

F

FIELD - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
FIELD_POSITION - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
FIELD_TYPE_AUTOMEDQUERY - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A field that can hold a AutoMedQuery
FIELD_TYPE_INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
A field that can hold an Integer constant
FIELD_TYPE_INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A field that can hold an Integer constant
FIELD_TYPE_ONE_OR_MORE - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
Used when the previous field type may be repeated any number of times.
FIELD_TYPE_ONE_OR_MORE - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Used when the previous field type may be repeated any number of times.
FIELD_TYPE_SCHEMEQUERY - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
A field that can hold a SchemeQuery
FIELD_TYPE_STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
A field that can hold a String constant
FIELD_TYPE_STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A field that can hold a String constant
findAttachedDataSources() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Schema's that are connected to this schema by some transformation pathway and are data sources (including this schema itself if it is a data source).
findAttachedExtDBs() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Schema's that are connected to this schema by some transformation pathway and have extensional data (including this schema itself if it has extensional data).
findAttachedExtSchemas() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Schema's that are connected to this schema by some transformation pathway and are extensional schemas (including this schema itself if it is an extensional schema).
findAutoMedFile(String) - Static method in class uk.ac.ic.doc.automed.Util
 
findFile(String) - Static method in class uk.ac.ic.doc.automed.Util
Returns a URL for the given name using several methods to make it useful for locating configuration files, resources etc.
findShortestPath(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of schemas such that: There is a transformation between each pair of adjacent schamas.
findShortestPath(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.reps.TransformationPathway
Deprecated. use findShortestPathway(Schema, Schema)
findShortestPath(String, String) - Static method in class uk.ac.ic.doc.automed.reps.TransformationPathway
Deprecated. use findShortestPathway(String, String)
findShortestPathway(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.reps.TransformationPathway
Find the shortest path containing the fewest number of steps between two schemas.
findShortestPathway(String, String) - Static method in class uk.ac.ic.doc.automed.reps.TransformationPathway
 
flattenSchemes(Object[]) - Static method in class uk.ac.ic.doc.automed.STR
Converts an Object array representation of a schema object's scheme into a String representation.
FLOAT - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
FLOAT - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a floating point atomic type
FLOAT_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
floatValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the value of this AutoMedFloat as an float
FOREACH_STATEMENT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Statement to iterate on lists
FOREIGN_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
formattedString() - Method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
formattedString(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
formattedString(Node) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
FROM - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
The first field can contain a SQLQuery WHERE
fromASG(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
fromASG(Node) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
fromASGList(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
fromASGList(Node) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
fromASGTuple(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
fromASGTuple(Node) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
function - Static variable in interface uk.ac.bbk.dcs.automed.qproc.Tags
 

G

getAccessMethod() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Returns the AccessMethod associated with this wrapper, which holds the details of the datasource being wrapped.
getAccessMethod(int) - Static method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the AccessMethod held with the given identifier in in the STR.
getAccessMethodBySID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns all the access method identifiers (AMID) that point to the access methods for the specified schema.
getAccessMethodDBDriver(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the database driver of the specified access method.
getAccessMethodPID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the protocol identifier (PID) of the specified access method.
getAccessMethods() - Method in class uk.ac.ic.doc.automed.reps.Schema
Find the AccessMethods that may be used to access the physical database system that holds this Schema.
getAccessMethodSID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) to which the specified access method connects.
getAccessMethodURL(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the URL of the specified access method.
getAccessMethodUsername(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the username of the specified access method.
getAction() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getActionFrom(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the action of the transformation.
getActionTo(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the action of the transformation.
getAdjacent() - Method in class uk.ac.ic.doc.automed.reps.Node
Returns all nodes that are adjacent to this node - that is, nodes for which a transformation is defined between its schema and this node's schema.
getAllCompositeTransformations() - Static method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns an array of all CompositeTransformation objects.
getAllNetworks() - Static method in class uk.ac.ic.doc.automed.reps.Network
Returns an array of all networks in the repository.
getAllNodes() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getAllProtocols() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of all the protocols found in the STR.
getAllReferencedSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns all the schema objects referenced in a transformation, including those referenced in its query.
The result of this method is the union of the results returned by the methods Transformation.getReferencedSchemaObjects() and Transformation.getReferencedSchemaObjectsInQuery().
getAllSchemaNames() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of all the schemas found in the STR.
getAllSchemeNames() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an Object array of schemes of all the schema objects that belong to the schema.
getAllSchemeNames(boolean, int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNames(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns an Object array of all objects' schemes of a schema.
getAllSchemeNamesString() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the scheme representation (of type String) of the schemes of all the schema objects that belong to the schema.
getAllSchemeNamesString(boolean, int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNamesString(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the scheme representation (of type String) of all objects' schemes of a schema.
getAllTrans() - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
getArgConstruct() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the Construct type of the ConstructScheme.
getArgumentAt(int) - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence
Returns a particular RuntimeArgument in this RuntimeArgumentSequence.
getArgumentAt(int) - Method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Returns a particular TemplateArgument in this TemplateArgumentSequence.
getArgumentDefinitionAt(int) - Method in class uk.ac.ic.doc.automed.reps.Statement
Returns a particular StatementArgumentDefinition in the Statements's argument definition list.
getArgumentDefinitionAt(int) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns a particular TransformationArgumentDefinition in the CompositeTransformations's argument definition list.
getArgumentDefinitions() - Method in class uk.ac.ic.doc.automed.reps.Statement
Returns an array of all the StatementArgumentDefinition objects of this Statement.
getArgumentDefinitions() - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns an array of all the TransformationArgumentDefinition objects in this CompositeTransformation.
getArgumentDefinitions(boolean) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns an array of TransformationArgumentDefinition objects.
getArgumentDefinitionsForStatement(int) - Static method in class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
Returns all the StatementArgumentDefinition objects of the specified statement.
getArgumentDefinitionsForTransformation(int) - Static method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Returns all the TransformationArgumentDefinition objects of the specified transformation.
getArguments() - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence
Returns an array of all the RuntimeArguments in this RuntimeArgumentSequence.
getArguments() - Method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Returns an array of all the TemplateArguments in this TemplateArgumentSequence.
getArguments() - Method in class uk.ac.ic.doc.automed.gui.ArgumentsDialog
Returns the values for the argument sequence.
getArguments() - Method in class uk.ac.ic.doc.automed.gui.ArgPane
Returns the arguments defined by the user in this ArgPane.
getArgumentsArgIdList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a list of identifiers of all the sequences of arguments
getArgumentsArgIdList() - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of identifiers of all the sequences of arguments
getArgumentsArgIdRef(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular argument's arg_id_ref field
getArgumentsArgIdRefList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular's sequence of arguments list of arg_id_ref fields.
getArgumentsArgPosList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular's sequence of arguments list of positions.
getArgumentsArgPosList(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a particular's sequence of arguments list of positions.
getArgumentsArgPosRef(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular argument's arg_pos_ref field
getArgumentsArgPosRefList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular's sequence of arguments list of arg_pos_ref fields.
getArgumentSequence() - Method in class uk.ac.ic.doc.automed.reps.StatementExecution
Returns the TemplateArgumentSequence of this StatementExecution.
getArgumentsForSequence(int) - Static method in class uk.ac.ic.doc.automed.reps.RuntimeArgument
Returns all RuntimeArgument objects of the specified sequence of arguments.
getArgumentsForSequence(int) - Static method in class uk.ac.ic.doc.automed.reps.TemplateArgument
Returns all the TemplateArgument objects of the specified sequence of arguments.
getArgumentsValue(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular argument's value field
getArgumentsValue(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a particular argument's value field
getArgumentsValueList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular's sequence of arguments list of values.
getArgumentsValueList(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a particular's sequence of arguments list of value fields.
getAttribute(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return a particular attribute from a tuple (counting from one)
getAttributeType(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
getAttributeType(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Returns the type of an attribute in the tuple that the cursor currently points at.
getAutoMedFile(String) - Static method in class uk.ac.ic.doc.automed.Util
 
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the AutoMed relational Model used to represent the Schema for the SQL datasource wrapper.
getAutoMedModelName() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Find the name of the Model that will be used to represent an AutoMed oriented view of the data source.
getAutoMedQueryToken() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return the AutoMedQueryToken of this node; ie the type of object query node represents.
getAutoMedTuple() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Return the tuple which the cursor current points at.
getAutoMedTuple(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Move the cursor and get the tuple that is at the point
getAutoMedWrapper(AccessMethod, String) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Build the appropriate wrapper for a given stored AccessMethod
getBoundingBox() - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
getBoundingBox() - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
getBoundingBox() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getBoundingBox() - Method in class uk.ac.ic.doc.automed.gui.Box
 
getBoundingBox() - Method in class uk.ac.ic.doc.automed.gui.Arc
 
getBounds(Positionable) - Method in interface uk.ac.ic.doc.automed.editor.Drawable
 
getCause() - Method in class uk.ac.ic.doc.automed.RepositoryAccessException
 
getCause() - Method in class uk.ac.ic.doc.automed.reps.AutoRepException
 
getCause() - Method in class uk.ac.ic.doc.automed.gui.GUIException
 
getChildren() - Method in class uk.ac.ic.doc.automed.reps.Node
If the network this node belongs to is directed then returns all the adjacent nodes that are children of this node, otherwise its behaviour is defined by the type of network but the children will be a subset of adjacent.
getCID() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the construct identifier (CID) of the construct.
getClassName() - Method in class uk.ac.ic.doc.automed.IntegrityException
Return the className of the object that the manipulation of caused this exception.
getClassName(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the class name of the method specified by meth_id
getClassNameList() - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the class names of all the methods found in the SMR
getCloseSchemeBracket() - Static method in class uk.ac.ic.doc.automed.STR
Return String used to close schemes
getCloseSchemeBracket() - Static method in class uk.ac.ic.doc.automed.reps.Schema
find what string is used to deliminate the closing of a scheme name, such as the ">>" in "<<person>>" or "<<person,name>>".
getColumnNames(ResultSet) - Static method in class uk.ac.ic.doc.automed.Util
 
getColumnTypes(ResultSet) - Static method in class uk.ac.ic.doc.automed.Util
 
getCommandClass() - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
getCommonSchema(Transformation) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getCompositeTransformation(int) - Static method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns a reference to a CompositeTransformation.
getCompositeTransformation(String) - Static method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns a reference to a CompositeTransformation.
getCompositeTransformationByName(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the ID (trans_id) of the composite transformation specified by name
getCompositeTransformationDefinitionArgPosList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument positions.
getCompositeTransformationDefinitionArgPosList(int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument positions.
getCompositeTransformationDefinitionDescription(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's argument definition (only the description field).
getCompositeTransformationDefinitionDescriptionList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the description field).
getCompositeTransformationDefinitionDescriptionList(int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the description field).
getCompositeTransformationDefinitionFieldName(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's argument definition (only the field_name field).
getCompositeTransformationDefinitionFieldNameList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the field_name field).
getCompositeTransformationDefinitionFieldNameList(int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the field_name field).
getCompositeTransformationDefinitionIsReturnedValue(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns whether a particular transformation's argument stores a returned value after the transformation's invocation, or not.
getCompositeTransformationDefinitionIsReturnedValueList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument types (if they store a returned value or not).
getCompositeTransformationDefinitionTableName(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's argument definition (only the table_name field).
getCompositeTransformationDefinitionTableNameList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the table_name field).
getCompositeTransformationDefinitionTableNameList(int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the table_name field).
getCompositeTransformationDescription(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the description of the composite transformation specified by trans_id
getCompositeTransformationExecutionArgId(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a sequence of arguments ID in the execution of a particular composite transformation
getCompositeTransformationExecutionArgIdList(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of sequence of arguments identifiers of a particular composite transformation's execution
getCompositeTransformationExecutionPcList(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of program counters of a particular composite transformation's execution.
getCompositeTransformationExecutionStId(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns the statement ID in the execution of a particular composite transformation
getCompositeTransformationExecutionStIdList(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of statement identifiers of a particular composite transformation's execution.
getCompositeTransformationExecutionTransIdList() - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of sequence of transformation identifiers that are being executed
getCompositeTransformationInvocationArgIdList() - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of sequence of arguments identifiers in the invocation of transformations
getCompositeTransformationName(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the name of the composite transformation specified by trans_id
getCompositeTransformationPreservesEquivalence(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns whether the composite transformation specified by trans_id preserves schema equivalence.
getCompositeTransformationProgramArgId(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the sequence of arguments ID that is going to be used at the specified pc of a transformation's template program.
getCompositeTransformationProgramArgIdList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a list of sequence of arguments identifiers of a particular composite transformation's template program, ie the sequences of arguments that are going to be used at each program counter.
getCompositeTransformationProgramPcList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a list of program counters of a particular composite transformation's template program.
getCompositeTransformationProgramStId(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the statement ID of the statement that is going to be executed at the specified pc of a transformation's template program.
getCompositeTransformationProgramStIdList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a list of statement identifiers of a particular composite transformation's template program, ie the statements that are going to be executed at each program counter.
getCompositeTransformationReturnedValuesDefinitionArgId(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the sequence of arguments ID that defines the returned values of the transformation
getCompositeTransformations(boolean) - Static method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns an array of CompositeTransformation objects.
getCompositeTransformationsDescriptionList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the descriptions of all the composite transformations found in the TTR
getCompositeTransformationsDescriptionList(boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the descriptions of all the composite transformations found in the TTR that preserve schema equivalence
getCompositeTransformationsNameList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the names of all the composite transformations found in the TTR
getCompositeTransformationsNameList(boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the names of all the composite transformations found in the TTR that preserve schema equivalence
getCompositeTransformationsPreservesEquivalenceList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the preserves_equivalence field of all the composite transformations found in the TTR
getCompositeTransformationsTransIdList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the IDs of all the composite transformations found in the TTR
getCompositeTransformationsTransIdList(boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the IDs of all the composite transformations found in the TTR that preserve schema equivalence
getConfigFileName() - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
Returns the name of the file used for data source definitions.
getConstraint() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the constraint associated with the transformation.
getConstraintReferencedConstructs(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns all the objects in a SchemaObject's scheme that are correspond to positions in the SchemaObject's scheme of type SCHEME_TYPE_CONSTRUCT
getConstraints() - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
getConstruct() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the construct type of the schema object.
getConstruct(int) - Static method in class uk.ac.ic.doc.automed.reps.Construct
Returns the Construct identified by the given construct identifier (CID).
getConstruct(String) - Method in class uk.ac.ic.doc.automed.reps.Model
Returns the named construct in the model or throws an AutoMedException if the construct name doesn't exist in the model.
getConstructByCID(int) - Static method in class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
 
getConstructClass() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the class of the construct.
getConstructClass(int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
getConstructClassString(int) - Static method in class uk.ac.ic.doc.automed.reps.Construct
 
getConstructDescription() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns a printable description of the construct including all of its schemes.
getConstructMID(int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Gets the Model Identifier for a given construct
getConstructModelingProgramMethod(int, int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the method that is going to be invoked at the specified pc of a construct's modeling program.
getConstructModelingProgramMethodList(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns a list of method invocations of a particular construct's modeling program, ie the methods that are going to be invoked at each program counter.
getConstructModelingProgramPcList(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns a list of program counters of a particular construct's modeling program.
getConstructName(int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
getConstructNames(int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Gets a list of all construct names for a modelling language
getConstructs() - Method in class uk.ac.ic.doc.automed.reps.Model
Returns an array of all the constructs in the model.
getConstructs(int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Get the CIDs of all constructs for a modelling language
getConstructSchemeArgCID(int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
getConstructSchemeCount(int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Gets the count of construct scheme arguments for this construct, the number is also the highest index (argument pos) usable as the construct scheme numbering starts at 1
getConstructSchemeHDMType(int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
getConstructSchemeLowerBound(int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
getConstructSchemeType(int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
getConstructSchemeUpperBound(int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
getConstructType() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getConstructType() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getCurrentModelSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getData() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return all the attributes of this tuple as an array
getDataSourceConnection(String) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
Gets a connection to the named data souce.
getDataSourceConnection(String, String, String) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
Gets a connection to the named data souce.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of the repository in the local database.
getDataSourceProperty(String, String) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
Returns the named property for the named data source as defined in the configuration file.
getDBDriver() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the database driver used for connecting to the database.
getDebugLevel() - Static method in class uk.ac.ic.doc.automed.STR
Return the value of the debug level at set by STR.setDebugLevel(int)
getDefaultDataSource() - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
getDefaultUserName() - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
getDescription() - Method in class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
Returns the description of this StatementArgumentDefinition.
getDescription() - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Returns the description of this TransformationArgumentDefinition.
getDescription() - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns the description of this CompositeTransformation.
getEdgePosition(Point) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
getEdgePosition(Point) - Method in class uk.ac.ic.doc.automed.gui.Line
 
getEdgePosition(Point) - Method in class uk.ac.ic.doc.automed.gui.Box
 
getEdgePosition(Point) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
getEdges() - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
getElements() - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
getEntityEdgePosition(Point) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
getExpression() - Method in class uk.ac.ic.doc.automed.reps.HDMConstraint
 
getExtend(boolean) - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
getFeatures() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
getField(int) - Method in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
Return a field from the query node.
getField(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return a field from the query node, where fields are counted from zero.
getFieldName() - Method in class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
Returns the fieldname of this StatementArgumentDefinition.
getFieldName() - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Returns the fieldname of this TransformationArgumentDefinition.
getFile(String) - Static method in class uk.ac.ic.doc.automed.Util
 
getFromOBID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema object identifier (OBID) of the input of the transformaiton (fromObject).
getFromObjectsUnmatched() - Method in class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getFromSchema() - Method in class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getFromSID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema identifier (SID) of the originating schema.
getFunction() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the function of the transformation.
getGenEdgePosition() - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
getGeneralConstruct() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getGeneralConstruct(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns a SchemaObject corresponding to the "general" entity of a generalization.
getGeneralisationExtend() - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
getGraphicObject(SchemaObject) - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
getGraphics() - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
getHDMNetwork() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getHDMType() - Method in class uk.ac.ic.doc.automed.reps.Scheme
 
getHDMType() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the HDM type of the ConstructScheme.
getHDMTypeString(int) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getHDMTypeString(int, boolean) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getIconHeight() - Method in class uk.ac.ic.doc.automed.gui.ArrowIcon
 
getIconWidth() - Method in class uk.ac.ic.doc.automed.gui.ArrowIcon
 
getInsertableSQLValue(Object, int) - Static method in class uk.ac.ic.doc.automed.Util
 
getInt(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return a particular attribute from a tuple (counting from one) as a 32 bit integer
getIsReturnedValue() - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Returns the type of this TransformationArgumentDefinition.
getLabel() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLabel() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getLabel() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getLabel() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getLabelXPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLabelXPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getLabelXPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getLabelXPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getLabelYPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLabelYPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getLabelYPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getLabelYPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getLeafs() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLocation() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getLower() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the lower bound indicating the minimum occurence of the ConstructScheme.
getManager() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getMDR_DataSourceName() - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Deprecated, use getDataSourceName instead
getMethodArgumentsPosList(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns a particular methods's list of argument positions.
getMethodArgumentsType(int, int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns a particular method's argument type.
getMethodArgumentsTypeList(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns a particular methods's list of argument types.
getMethodByName(String, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the ID (meth_id) of the method specified by name and class, or -1 if a method with the specified name doesn't exist in the specified class.
getMethodCall() - Method in class uk.ac.ic.doc.automed.reps.ModelingStatement
Returns the method to be called by this ModelingStatement.
getMethodName(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the name of the method specified by meth_id
getMethodsMethIdList() - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the IDs of all the methods found in the SMR
getMethodsNameList() - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the names of all the methods found in the SMR
getModel() - Method in class uk.ac.ic.doc.automed.reps.Construct
Return the Model to which this Construct belongs
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the `raw' relational Model used to represent the Schema for the SQL datasource wrapper.
getModel(int) - Static method in class uk.ac.ic.doc.automed.reps.Model
Returns a reference to the Model with the given MID.
getModel(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
Returns a reference to the Model with the given modelName.
getModelByName(String) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
getModelDescription() - Method in class uk.ac.ic.doc.automed.reps.Model
Returns a description of the model, each construct along with their schemes is listed in a way suitable for printing.
getModelDescription(boolean) - Method in class uk.ac.ic.doc.automed.reps.Model
Returns a description of the model, each construct along with its schemes are listed in a way suitable for printing.
getModelingProgram() - Method in class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
Returns the ModelingProgram that defines the graphical representation of this Construct.
getModelingProgramByCID(int) - Static method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Returns the ModelingProgram of a Construct.
getModelingStatementAt(int) - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Returns the statement at the specified program counter in this program.
getModelingStatements() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Returns an array containing all of the statements in this program in the correct order.
getModelName() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Find the name of the Model that will be used when a new wrapper is generated
getModelName(int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
getModelNames() - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Gets a list of all modelling language names in the MDR
getModels() - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Gets a list of all modelling language identifiers in the MDR
getModels() - Static method in class uk.ac.ic.doc.automed.reps.Model
Returns an array of all models.
getModelsHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getModelsSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getName() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getName() - Method in class uk.ac.ic.doc.automed.reps.Statement
Returns the name of this Statement.
getName() - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns the name of this CompositeTransformation.
getName() - Method in class uk.ac.ic.doc.automed.reps.HDMElement
 
getName() - Method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the name of the protocol.
getName() - Method in class uk.ac.ic.doc.automed.reps.Schema
Find the name of the schema.
getName() - Method in class uk.ac.ic.doc.automed.reps.Model
Returns the name of the model.
getName() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the name of the construct.
getName(int) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns the name of a schema from its SID without instantiating it
getNegativePostconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getNegativePreconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getNetwork() - Method in class uk.ac.ic.doc.automed.reps.Node
Returns the network this node belongs to
getNetwork(Schema, String) - Static method in class uk.ac.ic.doc.automed.reps.Network
Returns the complete undirected network that contains schema s.
getNetworkHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworkNamesHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworkNamesSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworksHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworksSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworkSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNode(Node) - Method in class uk.ac.ic.doc.automed.reps.Network
Deprecated.  
getNode(Schema) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns the network node representing the supplied schema
getNode(String) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns the network node representing the named schema
getNodes() - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
getNumberOfTrans() - Method in class uk.ac.ic.doc.automed.reps.TransformationPathway
 
getOBID() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the schema object identifier (OBID) of a schema object.
getObjectID() - Method in class uk.ac.ic.doc.automed.IntegrityException
Return the object indentifier of the the object, that the manipulation of caused this exception.
getObjectSchemeNames(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns an Object array of an object's scheme.
getObjectSchemeNamesString(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the scheme representation (of type String}) of an object's scheme.
getOpenSchemeBracket() - Static method in class uk.ac.ic.doc.automed.STR
Return String used to open schemes
getOpenSchemeBracket() - Static method in class uk.ac.ic.doc.automed.reps.Schema
Find what string is used to deliminate the opening of a scheme name, such as the "<<" in "<<person>>" or "<<person,name>>".
getOperation() - Method in class uk.ac.ic.doc.automed.IntegrityException
Return the operation attempted on the object that caused this exception.
getOperator() - Method in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
Return the operator type that this query node represents.
getOpts(String, String[]) - Static method in class uk.ac.ic.doc.automed.Util
 
getOriginalSchemas() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getOtherSchema(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schemas of the transformation.
getParents() - Method in class uk.ac.ic.doc.automed.reps.Node
If the network this node belongs to is directed then returns all the adjacent nodes that are parents of this node, otherwise its behaviour is defined by the type of network but the parents will be a subset of adjacent.
getPc() - Method in class uk.ac.ic.doc.automed.reps.StatementExecution
Returns the program counter of this StatementExecution.
getPID() - Method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the protocol identifier (PID).
getPosition() - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgument
Returns the position of this RuntimeArgument.
getPosition() - Method in class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
Returns the position in the statement's argument definition list of this StatementArgumentDefinition.
getPosition() - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Returns the position in the transformation's argument definition list of this TransformationArgumentDefinition.
getPosition() - Method in class uk.ac.ic.doc.automed.reps.TemplateArgument
Returns the position of this TemplateArgument.
getPositionInReferencedArgumentSequence() - Method in class uk.ac.ic.doc.automed.reps.TemplateArgument
Returns the position in the referenced arguments sequence.
getPositivePostconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getPositivePreconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getPreferredSize() - Method in class uk.ac.ic.doc.automed.gui.ToolTip
 
getPrimaryKeyOfTable(Schema, SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the primary key of a table SchemaObject.
getProtocol() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the Protocol used for connecting to the database.
getProtocol(int) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the Protocol with the given PID.
getProtocol(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the Protocol with the given protocolName.
getProtocolByName(String) - Static method in class uk.ac.ic.doc.automed.STR
Returns the protocol identifier (PID) of the specified protocol name.
getProtocolName(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of the given protocol identifier (PID).
getReferencedArgumentSequence() - Method in class uk.ac.ic.doc.automed.reps.TemplateArgument
Returns the TemplateArgumentSequence this TemplateArgument refers to.
getReferencedConstruct() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getReferencedConstruct(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the object a SchemaObject is attached to.
getReferencedConstructs() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getReferencedConstructs(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns all the objects in a SchemaObject's scheme that are correspond to positions in the SchemaObject's scheme of type SCHEME_TYPE_CONSTRUCT that are of NODAL class.
getReferencedField() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getReferencedField(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the field of a primary key SchemaObject.
getReferencedObjects(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns all the objects in a SchemaObject's scheme that are correspond to positions in the SchemaObject's scheme of type SCHEME_TYPE_CONSTRUCT.
getReferencedSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns all the schema objects referenced in a transformation.
getReferencedSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the set of SchemaObjects that are referenced by this SchemaObject.
getReferencedSchemaObjectsInQuery() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns all the schema objects referenced in the query of a transformation.
getReferencedTable() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getReferencedTable(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the table of a primary key SchemaObject.
getReferringObjects(Schema, SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the SchemaObject objects that include object in their schemes.
getRefSchemaObject() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Returns the SchemaObject that this Scheme wraps
getRepObject() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getRepObject() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getRepObject() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getRepObject() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getReturnedArgumentsDefinition() - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns the arguments that store returned values after the transformation's invocation.
getReverseTransformation() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the reverse transformation of the given transformation.
getRoots() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getRuntimeArgumentSequence(int) - Static method in class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence
Returns the reference to the RuntimeArgumentSequence with the given ID.
getRuntimeArgumentSequences() - Static method in class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence
Returns an array of all RuntimeArgumentSequence objects that have RuntimeArgument objects.
getSchema() - Method in class uk.ac.ic.doc.automed.reps.Node
Returns the schema at this node in the network
getSchema() - Method in class uk.ac.ic.doc.automed.reps.BadSchemaException
Returns the bad schema.
getSchema() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the schema that represents the database to which the access method connects.
getSchema() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the schema to which the schema object belongs.
getSchema() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Returns the Schema that represents in the datasource in terms of SchemaObjects.
getSchema(int) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema object which has the given schema identifier (SID).
getSchema(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema object with the given name.
getSchemaByName(String) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) of the schema specified by name.
Assumption:schema names are unique.
getSchemaIDs() - Static method in class uk.ac.ic.doc.automed.STR
Returns the IDs of all the schemas found in the STR.
getSchemaIDs() - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of SID of all the schemas found in the STR.
getSchemaLabelPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaName(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of the schema with the given schema identifier.
getSchemaNames() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of all the schemas found in the STR.
getSchemaNames() - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of names of all the schemas found in the STR.
getSchemaNetworkHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getSchemaNetworkSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getSchemaObject() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Returns the SchemaObject that this Scheme element is contained within, i.e.
getSchemaObject(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the SchemaObject of the transformation.
getSchemaObject(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return the SchemaObject that has the supplied name in this schema.
getSchemaObjectByName(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return the SchemaObject that has the supplied name in this schema.
getSchemaObjectByOBID(int) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the SchemaObject reference that has the given schema object identifier (OBID).
getSchemaObjectCID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the construct identifier (CID) of the schema object.
getSchemaObjectLabelPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjectPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of schema objects (of class SchemaObject) that belong to the schema.
getSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Construct
Find all SchemaObjects that are instances of a particular Construct.
getSchemaObjects(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the object identifiers (OBID) in ascending order of all the schema objects that belong to a particular schema.
getSchemaObjectsByCID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the object identifiers (OBID) in ascending order of all the schema objects that are instances of a certain construct type, in order of the OBID to which they belong
getSchemaObjectSID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) that a schema object belongs to.
getSchemaObjectValue(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the name (value) of the schema object.
getSchemaPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemas() - Method in class uk.ac.ic.doc.automed.reps.TransformationPathway
Return as an array the Schemas that appear in the Transformations of this TransformationPathway.
getSchemas() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schemas of the transformation.
getSchemaSIDs() - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) of all the schemas found in the STR.
getScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns an array of ConstructScheme objects representing the scheme of the construct.
getSchemeDefinition() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
All SchemaObjects when they are created by methods such as Schema.createSchemaObject, Schema.applyAddTransformation and Transformation.createAddTransformation require that an Object array be supplied that defines the scheme of the new SchemaObject.
getSchemeNames() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeNames(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeNamesString() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the scheme representation (of type String) of the name of all the elements in a schema object's scheme.
getSchemeNamesString(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeOBIDList(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of all schema object identifiers (OBID) by which a particular schema object is referenced.
getSchemeObjects() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemePos() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Returns the position of this Scheme in the definition of the SchemaObject it defines.
getSchemePos(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the position of a referenced schema object in the scheme of a particular schema object.
getSchemePosList(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of positions in the scheme of a particular schema object.
getSchemeSOBID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the object identifier (SOBID) of the referenced schema object in the specified schema object's scheme at the given position.
getSchemeSOBIDList(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of all schema object identifiers (SOBID) referenced by a particular schema object.
getSchemeString() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeString(Schema) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeType() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the scheme type of the ConstructScheme.
getSchemeTypeString(int) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getSchemeTypeString(int, boolean) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getSectionDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.STR
Gets the debug level which the section of code has been set to.
getSequenceId() - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgument
Returns the sequence identifier of this RuntimeArgument.
getSequenceId() - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence
Returns the sequence ID of this RuntimeArgumentSequence.
getSequenceId() - Method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Returns the sequence ID of this TemplateArgumentSequence.
getSequenceId() - Method in class uk.ac.ic.doc.automed.reps.TemplateArgument
Returns the sequence identifier of this TemplateArgument.
getShape() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getSID() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the schema identifier (SID) of the schema.
getSmartQuoting() - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
getSMR_DataSourceName() - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Deprecated, use getDataSourceName instead
getSpecEdgePosition() - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
getSpecialConstructs() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getSpecialConstructs(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns an array of SchemaObject objects corresponing to the sub-entities of a generalization.
getSQLQuery(int) - Method in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Return the SQLQuery held in a certain field, or null if the field is empty.
getSQLType(String) - Static method in class uk.ac.ic.doc.automed.Util
 
getSQLTypeName(int) - Static method in class uk.ac.ic.doc.automed.Util
 
getStatement() - Method in class uk.ac.ic.doc.automed.reps.StatementExecution
Returns the Statement of this StatementExecution.
getStatement(int) - Static method in class uk.ac.ic.doc.automed.reps.Statement
Returns a reference to a Statement.
getStatement(String) - Static method in class uk.ac.ic.doc.automed.reps.Statement
Returns a reference to a Statement.
getStatementByName(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns the ID (st_id) of the statement specified by name, or -1 if a statement with the specified name doesn't exist in the TTSR.
getStatementDefinitionArgPosList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's list of argument positions.
getStatementDefinitionDescription(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's argument definition (only the description field).
getStatementDefinitionDescriptionList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's list of argument definitions (only the description field).
getStatementDefinitionFieldName(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's argument definition (only the field_name field).
getStatementDefinitionFieldNameList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's list of argument definitions (only the field_name field).
getStatementDefinitionTableName(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's argument definition (only the table_name field).
getStatementDefinitionTableNameList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's list of argument definitions (only the table_name field).
getStatementExecutionAt(int) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns a particular StatementExecution in the CompositeTransformations's template program.
getStatementExecutions() - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns an array of all the StatementExecution objects in this CompositeTransformation.
getStatementExecutionsForTransformation(int) - Static method in class uk.ac.ic.doc.automed.reps.StatementExecution
Returns all the StatementExecution objects of the specified composite transformation.
getStatementName(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns the name of the statement specified by st_id
getStatements() - Static method in class uk.ac.ic.doc.automed.reps.Statement
Returns an array of all Statement objects.
getStatementsNameList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns the names of all the statements found in the TTSR
getStatementsStIdList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns the IDs of all the statements found in the TTSR
getStId() - Method in class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
Returns the statement identifier defining which statement this StatementArgumentDefinition belongs to.
getStId() - Method in class uk.ac.ic.doc.automed.reps.Statement
Returns the ID of this Statement.
getSTR_DataSourceName() - Static method in class uk.ac.ic.doc.automed.STR
Deprecated. use getDataSourceName()
getString(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return a particular attribute from a tuple (counting from one) as a String
getString(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return a field as a String value.
getTableForeignKeyPoints() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getTableForeignKeyPoints(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the table that a foreign key SchemaObject points.
getTableName() - Method in class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
Returns the tablename of this StatementArgumentDefinition.
getTableName() - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Returns the tablename of this TransformationArgumentDefinition.
getTableWithForeignKey() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getTableWithForeignKey(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the table of a foreign key SchemaObject.
getTemplateArgumentSequence(int) - Static method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Returns the reference to the TemplateArgumentSequence with the given ID.
getTemplateArgumentSequences() - Static method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Returns an array of all TemplateArgumentSequence objects that have TemplateArgument objects.
getTML(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.tml.TML
 
getTMLPathway(TransformationPathway) - Static method in class uk.ac.ic.doc.automed.tml.TMLPathway
 
getToOBID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema object identifier (OBID) of the output of the transformaiton (toObject).
getToObjectsUnmatched() - Method in class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getToSchema() - Method in class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getToSID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema identifier (SID) of the resultant schema.
getTranAction(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the action of transformation between two schemas.
getTranConstraint(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the constraint of a transformation between two schemas.
getTranFromObject(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema object to be transformed in a transformation.
getTranFromSchema(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of schema identifiers (SID) from which a particular schema can be derived.
getTranFunction(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the function of a transformation between two schemas.
getTransformation(int, int) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the transformation between two given schemas.
getTransformation(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the transformation between two given schemas.
getTransformationObject(int) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getTransformationObject(int, Schema) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Instantiates a transformation object.
getTransformations() - Static method in class uk.ac.ic.doc.automed.STR
Returns a vector representing all transformations in the repository
getTransformations() - Method in class uk.ac.ic.doc.automed.reps.TransformationPathway
Return as an array the Transformations that make up this TransformationPathway.
getTransformations() - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
getTransformations() - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an array of all Transformation that go out from a particular schema.
getTransformations() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Find the set of Transformations that involve this SchemaObject.
getTransformationsByOBID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the pairs of schema identifiers (SID) of all the schema transformations that involve the supplied OBID
getTransformationsFrom() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Transformation's that have this schema as the fromSchema field in the transformation table of the STR.
getTransformationsTo() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Transformation's that have this schema as the toSchema field in the transformation table of the STR.
getTransId() - Method in class uk.ac.ic.doc.automed.reps.StatementExecution
Returns the transformation identifier of the composite transformation this StatementExecution belongs to.
getTransId() - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Returns the composite transformation identifier defining which transformation this TransformationArgumentDefinition belongs to.
getTransId() - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns the ID of this CompositeTransformation.
getTranToObject(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema object as a result of a transformation.
getTranToSchema(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of schema identifiers (SID) which are derived from a particular schema.
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedString
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Return the Type (INTEGER, TUPLE, ...) of this AutoMedType
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
 
getUpper() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the upper bound indicating the maximum occurence of the ConstructScheme.
getURL() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the URL of the database to which the access method connects.
getUsername() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the username used for connecting to the database.
getValue() - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgument
Returns this RuntimeArgument's value field.
getValue() - Method in class uk.ac.ic.doc.automed.reps.TemplateArgument
Returns this TemplateArgument's value field.
getValue() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the name/value of the schema object.
getValue() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getValueForTemplateArgument(int, int, String, String[], HashMap) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns the value for a template argument.
getValueForTemplateArgumentPointingToArgId(int, int, String, String[], HashMap, Vector, boolean) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns the value for a template argument that points to another argument in the TTR.
getValuePosInScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the position in the construct's scheme where the construct's name is, i.e.
getVertices() - Method in class uk.ac.ic.doc.automed.reps.HDMEdge
 
getXPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getXPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getXPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getXPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getYPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getYPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getYPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getYPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
GraphicSchemaObject - class uk.ac.ic.doc.automed.gui.GraphicSchemaObject.
 
GraphicSchemaObject(GraphicManager, Schema, SchemaObject) - Constructor for class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
GREATERTHAN - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
GREATERTHANEQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
Gui - class uk.ac.ic.doc.automed.editor.Gui.
 
GUIException - exception uk.ac.ic.doc.automed.gui.GUIException.
The class of exceptions generated by the GUI.
GUIException(String) - Constructor for class uk.ac.ic.doc.automed.gui.GUIException
 
GUIException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.gui.GUIException
 

H

handleNonStatementArgument(int, String[], HashMap, Vector, boolean) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Creates an execution argument sequence according to a template argument sequence.
hasObject(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.Schema
Determines if the schema contains the given schema object.
HDM_TYPE_C - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to a constraint sentence in HDM
HDM_TYPE_E - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to edge name in HDM when instantiating the containing construct, this scheme position takes the name of the new edge to be created in HDM
HDM_TYPE_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
HDM_TYPE_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
HDM_TYPE_N - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to node name in HDM.
HDM_TYPE_N1 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_N2 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_P1 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_P2 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_R - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to node or edge name/s in HDM and to other Construct/s in the automed.reps API.
HDM_TYPE_Z - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme has no HDM representation
HDMConstraint - class uk.ac.ic.doc.automed.reps.HDMConstraint.
 
HDMConstraint() - Constructor for class uk.ac.ic.doc.automed.reps.HDMConstraint
 
HDMConstraint(String) - Constructor for class uk.ac.ic.doc.automed.reps.HDMConstraint
 
HDMEdge - class uk.ac.ic.doc.automed.reps.HDMEdge.
 
HDMEdge() - Constructor for class uk.ac.ic.doc.automed.reps.HDMEdge
 
HDMEdge(String) - Constructor for class uk.ac.ic.doc.automed.reps.HDMEdge
 
HDMEdge(String, HDMElement[]) - Constructor for class uk.ac.ic.doc.automed.reps.HDMEdge
 
HDMElement - class uk.ac.ic.doc.automed.reps.HDMElement.
 
HDMElement() - Constructor for class uk.ac.ic.doc.automed.reps.HDMElement
 
HDMElement(String) - Constructor for class uk.ac.ic.doc.automed.reps.HDMElement
 
HDMNetwork - class uk.ac.ic.doc.automed.reps.HDMNetwork.
 
HDMNetwork() - Constructor for class uk.ac.ic.doc.automed.reps.HDMNetwork
 
HDMNode - class uk.ac.ic.doc.automed.reps.HDMNode.
 
HDMNode() - Constructor for class uk.ac.ic.doc.automed.reps.HDMNode
 
HDMNode(String) - Constructor for class uk.ac.ic.doc.automed.reps.HDMNode
 
helpGetCurrentModel - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
helpHelp - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
helpSyntax - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
HORIZONTAL_EXT - Static variable in class uk.ac.ic.doc.automed.gui.Rhombus
 
HOUR - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one hour

I

IDENTIFIER_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
identifierSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
IllegalOperationException - exception uk.ac.ic.doc.automed.reps.IllegalOperationException.
 
IllegalOperationException(String) - Constructor for class uk.ac.ic.doc.automed.reps.IllegalOperationException
 
importConstructs(InputStream) - Method in class uk.ac.ic.doc.automed.reps.Model
 
importSchemaObjects(InputStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
importSchemes(InputStream) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
importTransformations(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
importTransformations(InputStream, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
In - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
IN_ROW - Static variable in class uk.ac.ic.doc.automed.gui.SchemaManager
 
InconsistentException - exception uk.ac.ic.doc.automed.InconsistentException.
A manipulation of the repository that should always succeed has failed.
InconsistentException(String) - Constructor for class uk.ac.ic.doc.automed.InconsistentException
Creates an InconsistentException when there has been no Exception that caused the error to discovered.
InconsistentException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.InconsistentException
Creates an InconsistentException when it is acting as a wrapper for other Exceptions.
INDEX - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
init_actions() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Action encapsulation object initializer.
INSIDE - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Token to represent the AutoMedWrapper.INTEGER atomic type
INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a twos-complement integer atomic type
INTEGER_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
IntegrateDialog - class uk.ac.ic.doc.automed.gui.IntegrateDialog.
A dialog that can be used for schema integration by name.
IntegrateDialog(Frame, String, boolean) - Constructor for class uk.ac.ic.doc.automed.gui.IntegrateDialog
 
integrateSchemas(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.gui.IntegrateDialog
 
IntegrityException - exception uk.ac.ic.doc.automed.IntegrityException.
An attempt has be made to alter the repository (or data structure representing it) in a way that would make it inconsistent.
IntegrityException(String, String, int, int) - Constructor for class uk.ac.ic.doc.automed.IntegrityException
Creates an IntegrityException, recording details of what operation was being attempted
IntegrityException(String, String, int, int, int) - Constructor for class uk.ac.ic.doc.automed.IntegrityException
Creates an IntegrityException, recording details of what operation was being attempted
intersectionByName(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an SchemaObject array containing the intersection by name between this schema (s1) and the schema passed as a parameter (s2).
intValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the value of this AutoMedInteger as an int
INVOCATION_STATEMENT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Statement to invoke other template transformations
invoke(RuntimeArgumentSequence) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Invokes this CompositeTransformation with the specified RuntimeArgumentSequence as arguments.
IQLfromResult(AutoMedResult) - Method in class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator
 
IQLfromResult(AutoMedResult) - Method in class uk.ac.bbk.dcs.automed.wrappers.Translator
 
isConstructRoot(int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
isConstructSchemeKey(int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
isCyclic() - Method in class uk.ac.ic.doc.automed.reps.Network
 
isDataSource() - Method in class uk.ac.ic.doc.automed.reps.Schema
Determines whether or not the schema represents an external data source.
isDependentOn(Transformation) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Determines whether or not the transformation is dependent on another transformation.
isDirected() - Method in class uk.ac.ic.doc.automed.reps.Network
 
isEmpty() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Tests if this program is empty.
isExecuted() - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns false if the specified transformation is not currently being executed, true otherwise.
isExtDB() - Method in class uk.ac.ic.doc.automed.reps.Schema
Determines whether or not the schema represents an extentional database.
isExtSchema() - Method in class uk.ac.ic.doc.automed.reps.Schema
Determines whether or not the schema is an extentional schema.
isFeatureInUse(int) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Test if a certain group of features is being implemented in the representation of the SQL92 data model in the AutoMed repository
isInRepository() - Method in class uk.ac.ic.doc.automed.reps.TransformationPathway
 
isKey() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Determine if this Scheme is part of the set of Schemes that uniquely identify the parent SchemaObject in a particular Schema
isKey() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns whether of not the ConstructScheme is part the key of the whole scheme.
isLeaf() - Method in class uk.ac.ic.doc.automed.reps.Node
True if (and only if) this node belongs to a directed network and this is a leaf node.
isNum() - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
isPrimaryKeyForeignKey() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
isPrimaryKeyForeignKey(Schema, SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns whether a foreign-key field SchemaObject is also a primary-key.
isRedundant(Transformation) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Determines whether or not the transformation and the given tran are redundant, e.g., two transformations are redundant if they transform the same schema object and their action is the opposite of the other (add/delete, extend/contract, etc.).
isRoot() - Method in class uk.ac.ic.doc.automed.reps.Node
True if (and only if) this node belongs to a directed network and this is a root node.
isRoot() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns whether or not the construct is a construct of its underlying model.
isSchemaCached(int) - Static method in class uk.ac.ic.doc.automed.STR
Deprecated. the isCached field in the schema table is no longer in use. Determines whether or not the objects of the specified schema are cached.
isSchemaDataSource(int) - Static method in class uk.ac.ic.doc.automed.STR
Determines whether or not the specified schema represents a data source.
isSchemaExtDB(int) - Static method in class uk.ac.ic.doc.automed.STR
Determines whether or not the specified schema represents an extensional database.
isSchemaExtSchema(int) - Static method in class uk.ac.ic.doc.automed.STR
Determines whether or not the specified schema is an extensional schema.
isSchemaObjectTemp(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Deprecated. the isTemp field in the object table is no longer in use. Determines whether or not the schema object is temporary.
isString() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Determine if this Scheme defines a String, rather than a reference to some other SchemaObject
isTree() - Method in class uk.ac.ic.doc.automed.reps.Network
 
isValidMethId(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
This method determines if a method with the specified meth_id exists in the SMR.
isValidStId(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
This method determines if a statement with the specified st_id exists in the TTSR.
isValidTransId(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
This method determines if a composite transformation with the specified trans_id exists in the TTR.
isWellformed() - Method in class uk.ac.ic.doc.automed.reps.TransformationPathway
 

J

JDBC_PROTOCOL_NAME - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
The name of the Protocol in the repository used to represent JDBC connections.

L

l() - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
lambda - Static variable in interface uk.ac.bbk.dcs.automed.qproc.Tags
 
Lambda - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
LArrow - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
layoutComponents() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperGUI
 
layoutContainer(Container) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
LDAB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
LESSTHAN - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
LESSTHANEQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
Let - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
Line - class uk.ac.ic.doc.automed.gui.Line.
 
Line() - Constructor for class uk.ac.ic.doc.automed.gui.Line
 
LIST_SCHEMA_LONG - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Constant used to indicate where schemes in schemas must be listed with all details, including the OBID as returned by SchemaObject.getOBID() SchemaObject}, and the Construct as returned by SchemaObject.getConstruct().
LIST_SCHEMA_NORMAL - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Constant used to indicate where schemes in schemas must be listed with all the type of each SchemaObject prefixing the scheme of each object.
LIST_SCHEMA_SHORT - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Constant used to indicate where schemes in schemas must be listed with the minimum of detail.
listenToComponents() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperGUI
 
listOfSchemes() - Method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
listOfSchemes(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
listOfSchemes(Node) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
listSchema() - Method in class uk.ac.ic.doc.automed.reps.Schema
List the Schema to the current output in a form designed for human interpretation.
listSchema(PrintStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
Shorthand for calling listSchema(out,LIST_SCHEMA_NORMAL)
listSchema(PrintStream, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
List the Schema to an output stream, using the specified format.
listSchemaHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
listSchemaSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
load(Schema) - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
Loads the schema specified into this SchemaManager.
LoadDialog - class uk.ac.ic.doc.automed.gui.LoadDialog.
 
LoadDialog(Frame, String, boolean) - Constructor for class uk.ac.ic.doc.automed.gui.LoadDialog
 
LONG_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
longValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the value of this AutoMedInteger as an long
LRB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
LSB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 

M

main(String[]) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.STRMethodTest
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Executing this class invokes this method which supplies a command line interface to the ModelDefinitionsRepository.
main(String[]) - Static method in class uk.ac.ic.doc.automed.STR
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
Provides a simple command line interface to enable the configuration file to be checked.
main(String[]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaEvolutionExample
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.reps.RepsTest
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.gui.SchemaTool
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.Editor
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperGUI
 
makeIdentifierSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
makeStringSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
materialize(Path) - Method in class uk.ac.ic.doc.automed.reps.Schema
Materialize the contents of an intentional schema via the given path.
MDR_DataSourceName - Static variable in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
mimicThisNode(Node) - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
minimumLayoutSize(Container) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
MINUTE - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one minute
Model - class uk.ac.ic.doc.automed.reps.Model.
The Model class
ModelDefinitionsRepository - class uk.ac.ic.doc.automed.ModelDefinitionsRepository.
Properties used from the MDR data source
ModelDefinitionsRepository() - Constructor for class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
ModelDefinitionsRepositoryException - exception uk.ac.ic.doc.automed.ModelDefinitionsRepositoryException.
The class of exceptions generated by ModelDefinitionsRepository.
ModelDefinitionsRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.ModelDefinitionsRepositoryException
 
ModelingProgram - class uk.ac.ic.doc.automed.reps.ModelingProgram.
Class representing the graphical representation of a Construct.
ModelingProgram() - Constructor for class uk.ac.ic.doc.automed.reps.ModelingProgram
Constructs a new, empty ModelingProgram
ModelingStatement - class uk.ac.ic.doc.automed.reps.ModelingStatement.
Class that defines the statement/method-call that can be used in a construct's graphical representation.
ModelingStatement(String) - Constructor for class uk.ac.ic.doc.automed.reps.ModelingStatement
Constructs a new ModelingStatement.
mouseClicked(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mouseDragged(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mouseEntered(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mouseExited(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mouseMoved(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mousePressed(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mouseReleased(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
MULTI - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
multiply(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the multiplication of two AutoMedFloats.
multiply(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the multiplication of two AutoMedIntegers.

N

Network - class uk.ac.ic.doc.automed.reps.Network.
 
Network(Schema[][]) - Constructor for class uk.ac.ic.doc.automed.reps.Network
Constructs a directed network from the schema paths supplied.
Network(String, Schema[][]) - Constructor for class uk.ac.ic.doc.automed.reps.Network
Constructs a directed network from the schema paths supplied.
Network(String, Schema[][], boolean, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.Network
Constructs a network from the schema paths supplied.
NEW_OBJECT_STATEMENT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Statement to create new objects
next_token() - Method in class uk.ac.bbk.dcs.automed.qproc.QLexer
 
next() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Returns true if the cursor can be moved to a next row
NO_EXT - Static variable in class uk.ac.ic.doc.automed.gui.Rhombus
 
Node - class uk.ac.ic.doc.automed.reps.Node.
 
Node - class uk.ac.bbk.dcs.automed.qproc.Node.
 
Node(int, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Node
 
Node(int, Object, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Node
 
Node(int, Object, Object, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Node
 
Node(Object, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Node
 
NOT - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
NOT_EQUAL - Static variable in class uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort comparison where .
NOTEQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
NotFoundException - exception uk.ac.ic.doc.automed.NotFoundException.
A request has be made for details of an object where the object is not present in the repository
NotFoundException(String) - Constructor for class uk.ac.ic.doc.automed.NotFoundException
Creates an NotFoundException when there has been no Exception that caused the error to discovered.
NotFoundException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.NotFoundException
Creates an NotFoundException when it is acting as a wrapper for other Exceptions.
NULL_CONSTRAINT - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
nullAction(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
num() - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
NumToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 

O

OBJECT_HDISTANCE - Static variable in class uk.ac.ic.doc.automed.gui.SchemaManager
 
OBJECT_VDISTANCE - Static variable in class uk.ac.ic.doc.automed.gui.SchemaManager
 
optimise() - Method in class uk.ac.ic.doc.automed.reps.TransformationPathway
 
optimisePathway(TransformationPathway) - Static method in class uk.ac.ic.doc.automed.tml.TranOptimiserNaive
 
Optimiser - class uk.ac.bbk.dcs.automed.qproc.Optimiser.
 
Optimiser(Rule[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Optimiser
 
OPTIONAL - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
OR - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
SQL logical OR binary operator for use within WHERE expressions

P

paint(Graphics) - Method in class uk.ac.ic.doc.automed.gui.ToolTip
 
paint(Graphics, Positionable[], JComponent) - Method in interface uk.ac.ic.doc.automed.editor.Drawable
 
paintChildren(Graphics) - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 
paintComponent(Graphics) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
paintIcon(Component, Graphics, int, int) - Method in class uk.ac.ic.doc.automed.gui.ArrowIcon
 
PATH - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
PinBoardLayout - class uk.ac.ic.doc.automed.editor.PinBoardLayout.
 
PinBoardLayout(Map, Map) - Constructor for class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
Positionable - interface uk.ac.ic.doc.automed.editor.Positionable.
 
PostgresWrapper - class uk.ac.ic.doc.automed.wrappers.PostgresWrapper.
A lower level wrapper for the conforming to the AutoMed SQL high level wrapper for Postgres SQL databases.
PostgresWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.PostgresWrapper
Generate a new wrapper instance from information held in the repository about how to access a data source.
PostgresWrapperFactory - class uk.ac.ic.doc.automed.wrappers.PostgresWrapperFactory.
A lower level wrapper factory for Postgres SQL databases conforming to the AutoMed SQL high level wrapper factory.
PostgresWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.PostgresWrapperFactory
 
preferredLayoutSize(Container) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
prefixAllNodalNames(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Create a new Schema which contains the same set of constructs as an existing, except each has been renamed to have a common prefix if it is of Construct type Nodal.
prefixSchemaObjectName(String, SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.Schema
Create a new Schema if the SchemaObject is a Nodal object, where the SchemaObject has had a prefix applied to the node name,
preservesEquivalence() - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Returns whether this CompositeTransformation preserves schema equivalence.
previous() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Returns true if the cursor can be moved back to a previous row
PRIMARY_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
PRIMITIVE_TRANSFORMATION_STATEMENT - Static variable in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Statement to execute primitive transformations
print() - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgument
 
print() - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence
 
print() - Method in class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
 
print() - Method in class uk.ac.ic.doc.automed.reps.Statement
 
print() - Method in class uk.ac.ic.doc.automed.reps.StatementExecution
 
print() - Method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
 
print() - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
 
print() - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
 
print() - Method in class uk.ac.ic.doc.automed.reps.TemplateArgument
 
print() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
 
printNetworkHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
printNetworkSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
printObject(Object, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
printObject(Object, Writer) - Static method in class uk.ac.ic.doc.automed.Util
 
printResultSet(ResultSet, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
printResultSet(ResultSet, Writer) - Static method in class uk.ac.ic.doc.automed.Util
 
printSQLFeedback(Object, OutputStream, String) - Static method in class uk.ac.ic.doc.automed.Util
 
printSQLFeedback(Object, Writer, String) - Static method in class uk.ac.ic.doc.automed.Util
 
printStackTrace() - Method in class uk.ac.ic.doc.automed.RepositoryAccessException
 
printStackTrace() - Method in class uk.ac.ic.doc.automed.reps.AutoRepException
 
printStackTrace() - Method in class uk.ac.ic.doc.automed.gui.GUIException
 
processCommands() - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
processCommands(Reader, Writer) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
production_table() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Access to production table.
protectIdentifier(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
protectString(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
Protocol - class uk.ac.ic.doc.automed.reps.Protocol.
The Protocol class describes a generic method of accessing data sources, such as JDBC or ODBC.

Q

QLexer - class uk.ac.bbk.dcs.automed.qproc.QLexer.
 
QLexer(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.QLexer
 
QLexer(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.QLexer
 
QParser - class uk.ac.bbk.dcs.automed.qproc.QParser.
CUP v0.10j generated parser.
QParser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.QParser
Default constructor.
QParser(Scanner) - Constructor for class uk.ac.bbk.dcs.automed.qproc.QParser
Constructor which sets the default scanner.
QSym - class uk.ac.bbk.dcs.automed.qproc.QSym.
CUP generated class containing symbol constants.
QSym() - Constructor for class uk.ac.bbk.dcs.automed.qproc.QSym
 
QueryReformulator - class uk.ac.bbk.dcs.automed.qproc.QueryReformulator.
 
QueryReformulator(Schema, Schema[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
 
quitHelp - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
quitSyntax - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 

R

r() - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
RDAB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
read(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
read(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Schema
 
read(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
read(InputStream, String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
 
read(InputStream, String) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
readConfigFile() - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
Reads the current configuration file.
readConfigFile(String) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
Reads the directives for the data sources defined in configFile.
reduce_table() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Access to reduce_goto table.
reflectCommandMethods() - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
reformulate(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
 
reloadModels() - Static method in class uk.ac.ic.doc.automed.reps.Model
This method empties the cached model data and then reloads it from the ModelDefinitionsRepository as if the class had just been loaded.
reloadSchemas() - Static method in class uk.ac.ic.doc.automed.reps.Schema
 
remove() - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgument
Removes this RuntimeArgument from the TER.
remove() - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence
Removes this RuntimeArgumentSequence.
remove() - Method in class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
Removes this StatementArgumentDefinition from the TTSR.
remove() - Method in class uk.ac.ic.doc.automed.reps.Statement
Removes this Statement
remove() - Method in class uk.ac.ic.doc.automed.reps.StatementExecution
Removes this StatementExecution from the TTR.
remove() - Method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Removes this TemplateArgumentSequence.
remove() - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Removes this TransformationArgumentDefinition from the TTR.
remove() - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Removes this CompositeTransformation
remove() - Method in class uk.ac.ic.doc.automed.reps.TemplateArgument
Removes this TemplateArgument from the TTR.
remove() - Method in class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
Removes this ConstructWithModelingProgram object.
remove() - Method in class uk.ac.ic.doc.automed.reps.Protocol
 
remove() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Remove this AccessMethod from the repository.
remove() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Removes this Transformation from the repository.
remove() - Method in class uk.ac.ic.doc.automed.reps.Schema
Removes the Schema from the repository.
remove() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
remove() - Method in class uk.ac.ic.doc.automed.reps.Model
Removes the Model from the repository.
remove() - Method in class uk.ac.ic.doc.automed.reps.Construct
Removes the Construct from the repository if it is not being used, and removes all the construct's Scheme elements.
remove(int) - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Removes the stamement at the specified program counter in this program.
remove(int) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Removes the protocol with the given protocol PID.
remove(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Removes the protocol with the given protocolName.
remove(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Removes the Schema with the given schemaName.
removeAccessMethod(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes an access method from the STR.
removeAccessMethodBySID(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes all access methods for the given schema identifier (SID).
removeAccessMethods() - Method in class uk.ac.ic.doc.automed.reps.Schema
Remove all AccessMethods recorded for this schema.
removeAllSchemes(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes all the schemes associated with the given schema object.
removeArgument(int) - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence
Removes a particular argument from this RuntimeArgumentSequence.
removeArgument(int) - Method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Removes a particular argument from this TemplateArgumentSequence.
removeArgument(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a particular position from a sequence of arguments
removeArgument(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Removes a particular position from a sequence of arguments
removeArgumentDefinition(int) - Method in class uk.ac.ic.doc.automed.reps.Statement
Removes a particular argument definition from this Statements's argument definition list.
removeArgumentDefinition(int) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Removes a particular argument definition from this CompositeTransformation's argument definition list.
removeArguments(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a particular sequence of arguments
removeArguments(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Removes a particular sequence of arguments
removeArgumentSequences() - Method in class uk.ac.ic.doc.automed.gui.SchemaTool
 
removeCompositeTransformation(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a composite transformation from the TTR comp_transformations table
removeCompositeTransformation(String) - Static method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Removes a CompositeTransformation
removeCompositeTransformationDefinition(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes all arguments definitions of a particular composite transformation
removeCompositeTransformationDefinition(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a particular position of a transformation's sequence of arguments
removeCompositeTransformationExecution(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Removes a template transformation's execution
removeCompositeTransformationExecution(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Removes a particular program counter of a template transformation's execution
removeCompositeTransformationInvocation(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Removes a composite transformation's invocation
removeCompositeTransformationProgram(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a particular template transformation's program
removeCompositeTransformationProgram(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a particular program counter of a transformation's template program
removeCompositeTransformationReturnedValuesArgumentDefinition(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a composite transformation returned values definition
removeConstruct(int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Remove the construct.
removeConstructFromMap(Construct) - Static method in class uk.ac.ic.doc.automed.reps.Construct
Deprecated. Remove constructs using @link remove() which will also do the job of this method Removes from the HashMap that holds the CID and ref to all Construct objs.
removeConstructFromMap(String) - Method in class uk.ac.ic.doc.automed.reps.Model
THIS METHOD DOESN'T DO ANYTHING AT THE MOMENT Sets the content of a particular position of the model's constructs list.
removeConstructModelingProgram(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Removes a particular construct's modeling program
removeConstructModelingProgram(int, int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Removes a particular program counter of a constrcut's modeling program
removeConstructScheme(int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Remove the construct.
removeExecutionTrace(int, Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Removes the trace of a composite transformation's executionfrom the TER.
removeLayoutComponent(Component) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
removeMethod(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Removes the method from the SMR methods table.
removeMethodArgument(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Removes all arguments of a particular method
removeMethodArgument(int, int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Removes a particular position of a methods's arguments
removeModel(int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Remove the modelling language.
removeModel(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
Removes the Model with the given modelName.
removeModelingProgram() - Method in class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
Remove the ModelingProgram from this Construct.
removeProtocol(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes the name of a protocol from the STR.
removeReturnedArgumentsDefinition() - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Removes the definitions of this transformation's returned arguments.
removeRuntimeArgumentSequence(int) - Static method in class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence
Removes a RuntimeArgumentSequence.
removeSchema(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a schema from the STR.
removeSchemaObject(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a schema object from the STR.
removeSchemaObjectFromMap(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Deprecated. use @link remove() to remove SchemaObjects Removes a SchemaObject object from the schema object HashMap.
removeSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Schema
Removes all schema objects that belong to the schema, i.e., the schema's SchemaObject list is emptied.
removeScheme(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a particular position of an object's scheme from the STR.
removeStatement(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Removes the statement from the TTSR statements table.
removeStatement(String) - Static method in class uk.ac.ic.doc.automed.reps.Statement
Removes a Statement
removeStatementDefinition(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Removes all arguments definitions of a particular statement
removeStatementDefinition(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Removes a particular position of a statement's sequence of arguments
removeStatementExecution(int) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Removes a particular statement execution from this CompositeTransformations's template program
removeTemplateArgumentSequence(int) - Static method in class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Removes a TemplateArgumentSequence.
removeTransformation(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a transformation from the STR.
removeTransformation(String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Removes the transformation between two given schemas.
removeVertex(HDMElement) - Method in class uk.ac.ic.doc.automed.reps.HDMEdge
 
repaint(Graphics, boolean) - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
replace(String, String) - Static method in class uk.ac.ic.doc.automed.Util
Returns a new string resulting from replacing all occurences of substring in string s with \ followed by substring.
replaceAllSchemaRefs(ASG, Schema) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
replaceAllSchemaRefs(Node, Schema) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
replaceNullSchemaRefs(ASG, Schema) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
replaceNullSchemaRefs(Node, Schema) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
RepositoryAccessException - exception uk.ac.ic.doc.automed.RepositoryAccessException.
The class of exceptions generated when executing updates and queries to TTSR, TTR, TER, SMR.
RepositoryAccessException(String) - Constructor for class uk.ac.ic.doc.automed.RepositoryAccessException
 
RepositoryAccessException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.RepositoryAccessException
 
RepsTest - class uk.ac.ic.doc.automed.reps.RepsTest.
 
RepsTest() - Constructor for class uk.ac.ic.doc.automed.reps.RepsTest
 
resultSetToArray(ResultSet) - Static method in class uk.ac.ic.doc.automed.Util
 
retract() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Remove this AccessMethod, and any other classes that are dependent upon its existance.
retract() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
retract() - Method in class uk.ac.ic.doc.automed.reps.Schema
Removes the Schema from the repository, together with any SchemaObjects left in the schema, and any Transformations that link to this schema.
retract() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Removes the SchemaObject from the repository, and all other objects which depend upon it.
retract() - Method in class uk.ac.ic.doc.automed.reps.Model
Removes the Model from the repository, together with all associated information --- in particular all Constructs belonging to the model are removed, and hence all SchemaObjects, and hence all Transformations on those objects.
retract() - Method in class uk.ac.ic.doc.automed.reps.Construct
Removes the Construct from the repository, and all other objects which depend upon it.
retract(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Removes any Schema with the given name from the repository, together with any SchemaObjects left in the schema, and any Transformations that link to this schema.
Rhombus - class uk.ac.ic.doc.automed.gui.Rhombus.
 
Rhombus() - Constructor for class uk.ac.ic.doc.automed.gui.Rhombus
 
rollbackSTR(Vector, Vector) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Removes the trace of a composite transformation's execution for the STR.
root() - Method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
RRB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
RSB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
Rule - class uk.ac.bbk.dcs.automed.qproc.Rule.
 
Rule(String, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Rule
 
rulevariable - Static variable in interface uk.ac.bbk.dcs.automed.qproc.Tags
 
RuntimeArgument - class uk.ac.ic.doc.automed.reps.RuntimeArgument.
The class to create run-time (during a template composite transformation's execution) arguments
RuntimeArgument(int, int, String) - Constructor for class uk.ac.ic.doc.automed.reps.RuntimeArgument
Constructs a new RuntimeArgument storing the specified value.
RuntimeArgument(int, String) - Constructor for class uk.ac.ic.doc.automed.reps.RuntimeArgument
Constructs a new RuntimeArgument storing the specified value and creates a new sequence of arguments.
RuntimeArgumentSequence - class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence.
The class to create run-time (during a template composite transformation's execution) argument sequences
RuntimeArgumentSequence() - Constructor for class uk.ac.ic.doc.automed.reps.RuntimeArgumentSequence
Constructs a new RuntimeArgumentSequence without any RuntimeArgument objects

S

safeSQLString(String) - Static method in class uk.ac.ic.doc.automed.Util
Provide a version of a string that is safe to use in JDBC update statements.
sameScheme(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Determines whether or not the scheme is the same as that of the given SchemaObject.
Schema - class uk.ac.ic.doc.automed.reps.Schema.
The Schema class
SCHEMA_NAME - Static variable in class uk.ac.ic.doc.automed.TemplateExecutionRepository
 
schema() - Method in class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
SchemaCanvas - class uk.ac.ic.doc.automed.gui.SchemaCanvas.
 
SchemaCanvas(Frame) - Constructor for class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
SchemaCanvas(Frame, JScrollPane) - Constructor for class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
SchemaEvolutionExample - class uk.ac.ic.doc.automed.reps.SchemaEvolutionExample.
 
SchemaEvolutionExample() - Constructor for class uk.ac.ic.doc.automed.reps.SchemaEvolutionExample
 
SchemaManager - class uk.ac.ic.doc.automed.gui.SchemaManager.
 
SchemaManager(GraphicCanvas) - Constructor for class uk.ac.ic.doc.automed.gui.SchemaManager
 
SchemaMapGenerator - class uk.ac.ic.doc.automed.reps.SchemaMapGenerator.
 
SchemaMapGenerator() - Constructor for class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
SchemaModelingRepository - class uk.ac.ic.doc.automed.SchemaModelingRepository.
 
SchemaModelingRepository() - Constructor for class uk.ac.ic.doc.automed.SchemaModelingRepository
 
SchemaModelingRepositoryException - exception uk.ac.ic.doc.automed.SchemaModelingRepositoryException.
The class of exceptions generated by TemplateTransformationSyntaxRepository.
SchemaModelingRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.SchemaModelingRepositoryException
 
SchemaObject - class uk.ac.ic.doc.automed.reps.SchemaObject.
The SchemaObject class
SchemasNotIdenticalException - exception uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException.
This exception is generated when an attempt to join to transformation pathways via createIdentTransformation() fails due to the schemas' object schemes being different.
SchemasNotIdenticalException(Schema, Schema, SchemaObject[], SchemaObject[]) - Constructor for class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
SchemaTool - class uk.ac.ic.doc.automed.gui.SchemaTool.
 
SchemaTool() - Constructor for class uk.ac.ic.doc.automed.gui.SchemaTool
 
SchemaTransformationRepository - class uk.ac.ic.doc.automed.SchemaTransformationRepository.
Old name for the STR
SchemaTransformationRepository() - Constructor for class uk.ac.ic.doc.automed.SchemaTransformationRepository
 
SchemaTransformationRepositoryException - exception uk.ac.ic.doc.automed.SchemaTransformationRepositoryException.
Old name for STRException
SchemaTransformationRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.SchemaTransformationRepositoryException
 
scheme - Static variable in interface uk.ac.bbk.dcs.automed.qproc.Tags
 
Scheme - class uk.ac.ic.doc.automed.reps.Scheme.
The Scheme class is used to described each element of the scheme of SchemaObject.
SCHEME_HDM_TYPE_C - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - constraints
SCHEME_HDM_TYPE_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_HDM_TYPE_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_HDM_TYPE_N1 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - new node at position 1
SCHEME_HDM_TYPE_N2 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - new node at position 2
SCHEME_HDM_TYPE_P1 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - pre-existing node at position 1
SCHEME_HDM_TYPE_P2 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - pre-existing node at position 2
SCHEME_TYPE_ALTERNATION - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
SCHEME_TYPE_CONSTRUCT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
SCHEME_TYPE_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_TYPE_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_TYPE_NAME - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
SCHEME_TYPE_SEQUENCE - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
scheme() - Method in class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
Scheme(SchemaObject, int, SchemaObject, boolean, int, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.Scheme
Creates a new scheme for a schema object.
SchemeInfo - class uk.ac.bbk.dcs.automed.qproc.SchemeInfo.
 
SchemeInfo(Schema, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
SchemeInfo(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
SchemeInfo(String, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
SchemeInstances - class uk.ac.ic.doc.automed.wrappers.SchemeInstances.
Provides a representation of the data associated with a scheme in an AutoMed Schema.
SchemeInstances() - Constructor for class uk.ac.ic.doc.automed.wrappers.SchemeInstances
 
SchemeQuery - class uk.ac.ic.doc.automed.wrappers.SchemeQuery.
A generic representation of query expressions as trees, where each SchemeQuery has an operator type, and 0 or more fields that have a field type
SchemeQuery() - Constructor for class uk.ac.ic.doc.automed.wrappers.SchemeQuery
 
SECOND - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one minute
SELECT - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
The SQL SELECT operator; the first field should contain a SQLQuery with a FROM operator, and the remaining fields should be relation attribute identifiers
selectionModes - Variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
SemanticException - exception uk.ac.ic.doc.automed.editor.SemanticException.
 
SemanticException(String, int) - Constructor for class uk.ac.ic.doc.automed.editor.SemanticException
 
SemiColon - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
set_l(Node) - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
set_r(Node) - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
set(int, ModelingStatement) - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Replaces the statement at the specified program counter in this program with the specified statement.
setAccessMethodDBDriver(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the database driver of a particular access method.
setAccessMethodPID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the protocol identifier (PID) of a particular access method.
setAccessMethodSID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the schema identifier (SID) of a particular access method.
setAccessMethodURL(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the URL of a particular access method.
setAccessMethodUsername(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the username of a particular access method.
setArcHeight(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setArcWidth(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setArgConstruct(Construct) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the Construct in the ConstructScheme.
setArgumentsArgIdRef(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets an argument's arg_id_ref field
setArgumentsArgPosRef(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets an argument's arg_pos_ref field
setArgumentSequence(TemplateArgumentSequence) - Method in class uk.ac.ic.doc.automed.reps.StatementExecution
Sets the TemplateArgumentSequence of this StatementExecution
setArgumentsValue(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets an argument's value field
setArgumentsValue(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Sets an argument's value field
setAttribute(int, AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Set the value of a certain field
setBaseName(String) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Set what name is used in the AutoMed repository for the Model in which SQL is to be represented.
setBgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setBgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setBgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setClassName(int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Sets the class name of the method specified by meth_id
setCloseSchemeBracket(String) - Static method in class uk.ac.ic.doc.automed.STR
Set the String that is used to close a scheme name, such as "<<person>>" or "<<person,name>>" By default it is set to ">>".
setCommandClass(Class) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
setCommandHelp(String[][]) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
setCompositeTransformationDefinitionDescription(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets a particular transformation's argument definition (the description field).
setCompositeTransformationDefinitionFieldName(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets a particular transformation's argument definition (the field_name field).
setCompositeTransformationDefinitionIsReturnedValue(int, int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets a particular transformation's argument type.
setCompositeTransformationDefinitionTableName(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets a particular transformation's argument definition (the table_name field).
setCompositeTransformationDescription(int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the description of the composite transformation specified by trans_id
setCompositeTransformationExecutionArgId(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Sets the sequence of arguments identifier in a specific program counter in the composite transformation's execution
setCompositeTransformationExecutionStId(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Sets the statement identifier in a specific program counter in the composite transformation's execution
setCompositeTransformationName(int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the name of the composite transformation specified by trans_id
setCompositeTransformationPreservesEquivalence(int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the preserves equivalence field of the composite transformation specified by trans_id
setCompositeTransformationProgramArgId(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the sequence of arguments ID in a specific program counter in the composite transformation's template program
setCompositeTransformationProgramStId(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the statement identifier in a specific program counter in the specified composite transformation's template program
setCompositeTransformationReturnedValuesDefinitionArgId(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the sequence of arguments ID that defines the transformation's returned values.
setConfigFileName(String) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
Sets the name of the file used for data source defintiions, this resets any data cached in the MDR or STR and invalidates all objects returned by them prior to this call.
setConstraints(HDMConstraint[]) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
setConstructClass(int) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets the class of the construct.
setConstructClass(int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
setConstructMID(int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Changes the modelling language that a construct belongs to
setConstructModelingProgramMethod(int, int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Sets the method in a specific program counter in the specified construct's modeling program
setConstructName(int, String) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
setConstructRoot(int, boolean) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
setConstructSchemeArgCID(int, int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
setConstructSchemeHDMType(int, int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
setConstructSchemeKey(int, int, boolean) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
setConstructSchemeLowerBound(int, int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
setConstructSchemeType(int, int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
setConstructSchemeUpperBound(int, int, int) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
setConstructType(Construct) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Sets the construct type of the schema object.
setData(Object) - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
setDataSource(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
Sets whether or not the schema represents an external data source.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the name of the repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Sets the name of the repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Sets the name of the repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Sets the name of the repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Sets the name of the repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name of the Schema Transformation Repository in the local database.
setDBDriver(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the database driver used for connecting to the database.
setDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.STR
Control the printing of debug information printed on the command line
setDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Set the debug level for all AutoMed wrappers.
setDefaultDataSource(String) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
setDefaultUserName(String) - Static method in class uk.ac.ic.doc.automed.DataSourceRepository
 
setDescription(String) - Method in class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
Sets the description of this StatementArgumentDefinition.
setDescription(String) - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Sets the description of this TransformationArgumentDefinition .
setDescription(String) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Sets this CompositeTransformation's description.
setEdges(HDMEdge[]) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
setElements(HDMElement[]) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
setEndAggregation(boolean) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setEndAngle(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setEndArrow(boolean) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setExpression(String) - Method in class uk.ac.ic.doc.automed.reps.HDMConstraint
 
setExtDB(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
Sets whether or not the schema represents an extentional database.
setExtend(int) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setExtSchema(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
Sets whether or not the schema is an extentional schema.
setFeatures(int) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Allows certain features of the SQL92 data model to be represented in the AutoMed repository.
setFgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setFgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setFgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setFgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setField(int, Object) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return a field in the query node.
setFieldName(String) - Method in class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
Sets the fieldname of this StatementArgumentDefinition.
setFieldName(String) - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Sets the fieldname of this TransformationArgumentDefinition .
setFocus(Point) - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
setFontColour(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setFontColour(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setFontColour(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setFontColour(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setFontName(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setFontName(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setFontName(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setFontName(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setFontSize(int) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setFontSize(int) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setFontSize(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setFontSize(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setFontStyle(int) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setFontStyle(int) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setFontStyle(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setFontStyle(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setGraphicManager(GraphicManager) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
setGraphics(Graphics) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setGraphics(Graphics) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setGraphics(Graphics) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setGraphics(Graphics) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setHDMType(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the HDM type of the ConstructScheme.
setHeight(int) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setHeight(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setHeight(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setIsReturnedValue(boolean) - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Sets the isReturnedValue type of this TransformationArgumentDefinition.
setKey(boolean) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets whether or not the current scheme position is part the key of the whole scheme.
setLabel(String) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabel(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabel(String) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLabel(String) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLabelPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabelPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabelPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLabelPosition(int, int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLabelXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabelXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabelXPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLabelXPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLabelYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabelYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabelYPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLabelYPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLayout(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setLayoutAxis(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setListData(Object[]) - Method in class uk.ac.ic.doc.automed.gui.LoadDialog
 
setLocation(Point) - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
setLower(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the lower bound indicating the minimum occurence of the ConstructScheme.
setMDR_DataSourceName(String) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
Deprecated. use setDataSourceName()
setMethodArgumentsType(int, int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Sets a particular method's argument type.
setMethodName(int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Sets the name of the method specified by meth_id
setModelingProgram(ModelingProgram) - Method in class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
Defines the graphical representation of this Construct.
setModelName(int, String) - Static method in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Statement
Sets this Statement's name.
setName(String) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Sets this CompositeTransformation's name.
setName(String) - Method in class uk.ac.ic.doc.automed.reps.HDMElement
 
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Protocol
Sets the name of the protocol to the given string.
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Set the name of a Schema.
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Model
Sets the model's name.
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets the name of the construct to the given string.
setNodes(HDMNode[]) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
setOpenCloseSchemeBracket(String, String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Set the Strings that is used to open and close a scheme name, such as the "<<" and ">>" in "<<person>>" or "<<person,name>>".
setOpenSchemeBracket(String) - Static method in class uk.ac.ic.doc.automed.STR
Set the String that is used to open a scheme name, such as "<<person>>" or "<<person,name>>".
setPoint1(Point) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setPoint2(Point) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setPosition(int, int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setPreservesEquivalence(boolean) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Sets whether this CompositeTransformation preserves schema equivalence.
setProtocol(Protocol) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the protocol used for connecting to the database.
setProtocolName(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name of the protocol specified by the given protocol identifier (PID).
setReference(int) - Method in class uk.ac.ic.doc.automed.reps.TemplateArgument
Sets the TemplateArgument to refer to the transformation's arguments.
setReference(TemplateArgument) - Method in class uk.ac.ic.doc.automed.reps.TemplateArgument
Sets this TemplateArgument to refer to another TemplateArgument.
setReference(TemplateArgumentSequence, int) - Method in class uk.ac.ic.doc.automed.reps.TemplateArgument
Sets this TemplateArgument to refer to the specified position in the specified TemplateArgumentSequence.
setReturnedArgumentsDefinition(TemplateArgumentSequence) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Sets the arguments that store returned values after the transformation's invocation.
setRoot(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets whether or not the construct is a construct type of its underlying data model.
setRounded(boolean) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setSchema(Schema) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the schema that represents the database to which the access method connects.
setSchema(Schema) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Sets the schema to which the schema object belongs.
setSchemaCached(int, boolean) - Static method in class uk.ac.ic.doc.automed.STR
Deprecated. the isCached field in the schema table is no longer in use.
setSchemaDataSource(int, boolean) - Static method in class uk.ac.ic.doc.automed.STR
Sets whether or not a schema is a data source.
setSchemaExtDB(int, boolean) - Static method in class uk.ac.ic.doc.automed.STR
Sets whether or not a schema is an extentional database.
setSchemaExtSchema(int, boolean) - Static method in class uk.ac.ic.doc.automed.STR
Sets whether or not a schema is an extentional schema.
setSchemaLabelPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaName(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name of schema.
setSchemaObjectCID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the construct identifier (CID) of the schema object.
setSchemaObjectLabelPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectSID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the schema identifier (SID) to which a particular schema object belongs.
setSchemaObjectValue(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name/value of the schema object.
setSchemaPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemeSOBID(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the referenced schema object in a specific position of the scheme of a schema object.
setSchemeType(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the scheme type of the ConstructScheme.
setScrollPane(JScrollPane) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
setSectionDebugLevel(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Set the level of debug info output to the console for a numbered section of code.
setShape(SchemaShape) - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
setShapeLocation(Point) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setShapeLocation(Point) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setShapeLocation(Point) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setSmartQuoting(boolean) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
setStartAggregation(boolean) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setStartAngle(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setStartArrow(boolean) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setStatement(Statement) - Method in class uk.ac.ic.doc.automed.reps.StatementExecution
Sets the Statement of this StatementExecution.
setStatementDefinitionDescription(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Sets a particular statement's argument definition (the description field).
setStatementDefinitionFieldName(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Sets a particular statement's argument definition (the field_name field).
setStatementDefinitionTableName(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Sets a particular statement's argument definition (the table_name field).
setStatementName(int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Sets the name of the statement specified by st_id
setSTR_DataSourceName(String) - Static method in class uk.ac.ic.doc.automed.STR
Deprecated. use setDataSourceName()
setStyle(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setStyle(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setStyle(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setStyle(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setTableName(String) - Method in class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
Sets the tablename of this StatementArgumentDefinition.
setTableName(String) - Method in class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Sets the tablename of this TransformationArgumentDefinition .
setTag(int) - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
setText(String) - Method in class uk.ac.ic.doc.automed.gui.ToolTip
Sets the text to be displayed by this ToolTip.
setText(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setText(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setText(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setText(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setTextLocation(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setTextLocation(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setTextLocation(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setTextLocation(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setTranAction(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the action of a transformation between two schemas.
setTranConstraint(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the constraint of a transformation between two schemas.
setTranFromObject(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the object identifier (OBID) of the schema object to be transformed in a transformation
setTranFunction(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the function of a transformation between two schemas.
setTranToObject(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the object identifier (OBID) of the schema object as a result of a transformation.
setUpper(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the upper bound indicating the maximum occurence of the ConstructScheme.
setURL(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the URL of the database to which the access method connects.
setUsername(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the username used for connecting to the database.
setValue(String) - Method in class uk.ac.ic.doc.automed.reps.RuntimeArgument
Sets the value of this RuntimeArgument.
setValue(String) - Method in class uk.ac.ic.doc.automed.reps.TemplateArgument
Sets the value of this TemplateArgument.
setValue(String) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Sets the name/value of the schema object.
setWidth(int) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setWidth(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setWidth(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setXPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setXPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setYPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
show() - Method in class uk.ac.ic.doc.automed.gui.ToolTip
 
showDialog() - Method in class uk.ac.ic.doc.automed.gui.LoadDialog
 
SINGLE - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
size() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Returns the number of statements in this program.
size() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
size() - Method in class uk.ac.ic.doc.automed.tml.TMLPathway
 
source() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
 
special - Static variable in interface uk.ac.bbk.dcs.automed.qproc.Tags
 
SQL_MODEL_FOREIGN_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SQL_MODEL_INDEX - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SQL_MODEL_PRIMARY_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SQL_MODEL_TABLE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
The name of the Construct used to represent SQL tables.
SQLQuery - class uk.ac.ic.doc.automed.wrappers.SQLQuery.
An SQLQuery expression tree that can be generated by the high level wrapper SQLWrapper and used by a low level wrapper as the basis for generating SQL queries on a relational database.
SQLQuery(AutoMedQueryToken, Object[]) - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
SQLResult - class uk.ac.ic.doc.automed.wrappers.SQLResult.
Provides a representation of the data associated with a scheme in an AutoMed Schema.
SQLResult(int) - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLResult
return the instance of the scheme which the cursor currently points at, as an ArrayList of Objects.
SQLTranslator - class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator.
 
SQLTranslator() - Constructor for class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator
 
SQLWrapper - class uk.ac.ic.doc.automed.wrappers.SQLWrapper.
An AutoMed high wrapper for connecting to SQL databases that have a JBDC driver.
SQLWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
SQLWrapperFactory - class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory.
An AutoMed high wrapper factory for creating SQLWrapper instances.
SQLWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
start_production() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Indicates start production.
start_state() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Indicates start state.
Statement - class uk.ac.ic.doc.automed.reps.Statement.
The class to create statements that can be used in a template transformation's program.
Statement(String) - Constructor for class uk.ac.ic.doc.automed.reps.Statement
Constructs a new Statement without any StatementArgumentDefinition objects.
StatementArgumentDefinition - class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition.
The class used to define a statement's arguments.
StatementArgumentDefinition(int, int, String, String, String) - Constructor for class uk.ac.ic.doc.automed.reps.StatementArgumentDefinition
Constructs a new StatementArgumentDefinition.
StatementExecution - class uk.ac.ic.doc.automed.reps.StatementExecution.
The class used to define a template transformation's program.
StatementExecution(int, int, Statement, TemplateArgumentSequence) - Constructor for class uk.ac.ic.doc.automed.reps.StatementExecution
Constructs a new StatementExecution.
STR - class uk.ac.ic.doc.automed.STR.
The STR library<<
STR_DataSourceName - Static variable in class uk.ac.ic.doc.automed.STR
 
STR() - Constructor for class uk.ac.ic.doc.automed.STR
 
STRException - exception uk.ac.ic.doc.automed.STRException.
The class of exceptions generated by STR.
STRException(String) - Constructor for class uk.ac.ic.doc.automed.STRException
Creates a STRException.
STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent an arbitrary length string in the unicode character set.
STRING_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
stringSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
stringToObject(String, Class) - Static method in class uk.ac.ic.doc.automed.Util
 
STRMethodTest - class uk.ac.ic.doc.automed.STRMethodTest.
 
STRMethodTest() - Constructor for class uk.ac.ic.doc.automed.STRMethodTest
 
StrToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
subtract(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the difference of two AutoMedFloats.
subtract(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the difference of two AutoMedIntegers.
SYMBOL_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
syncWithRepository() - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
Syntax - class uk.ac.ic.doc.automed.reps.Syntax.
 
Syntax - class uk.ac.ic.doc.automed.editor.Syntax.
 
Syntax() - Constructor for class uk.ac.ic.doc.automed.reps.Syntax
 
Syntax() - Constructor for class uk.ac.ic.doc.automed.editor.Syntax
 
SyntaxException - exception uk.ac.ic.doc.automed.reps.SyntaxException.
 
SyntaxException - exception uk.ac.ic.doc.automed.editor.SyntaxException.
 
SyntaxException(String) - Constructor for class uk.ac.ic.doc.automed.reps.SyntaxException
 
SyntaxException(String, int) - Constructor for class uk.ac.ic.doc.automed.editor.SyntaxException
 
SYSTEM - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 

T

TABLE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
tag() - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
Tags - interface uk.ac.bbk.dcs.automed.qproc.Tags.
 
targets() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
 
TemplateArgument - class uk.ac.ic.doc.automed.reps.TemplateArgument.
The class to create compile-time arguments (arguments used in template transformation's definitions)
TemplateArgument(int, int) - Constructor for class uk.ac.ic.doc.automed.reps.TemplateArgument
Constructs a new TemplateArgument that refers to a composite transformation's arguments and creates a new sequence of arguments.
TemplateArgument(int, int, int) - Constructor for class uk.ac.ic.doc.automed.reps.TemplateArgument
Constructs a new TemplateArgument that refers to a composite transformation's arguments.
TemplateArgument(int, int, String) - Constructor for class uk.ac.ic.doc.automed.reps.TemplateArgument
Constructs a new TemplateArgument storing the specified value.
TemplateArgument(int, int, TemplateArgument) - Constructor for class uk.ac.ic.doc.automed.reps.TemplateArgument
Constructs a new TemplateArgument that refers to another TemplateArgument
TemplateArgument(int, int, TemplateArgumentSequence, int) - Constructor for class uk.ac.ic.doc.automed.reps.TemplateArgument
Constructs a new TemplateArgument that refers to another argument
TemplateArgument(int, String) - Constructor for class uk.ac.ic.doc.automed.reps.TemplateArgument
Constructs a new TemplateArgument storing the specified value and creates a new sequence of arguments.
TemplateArgument(int, TemplateArgument) - Constructor for class uk.ac.ic.doc.automed.reps.TemplateArgument
Constructs a new TemplateArgument that refers to another TemplateArgument and creates a new argument sequence
TemplateArgument(int, TemplateArgumentSequence, int) - Constructor for class uk.ac.ic.doc.automed.reps.TemplateArgument
Constructs a new TemplateArgument that refers to another argument and creates a new argument sequence
TemplateArgumentSequence - class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence.
The class to create compile-time argument sequences (sequences used in template transformation's definitions)
TemplateArgumentSequence() - Constructor for class uk.ac.ic.doc.automed.reps.TemplateArgumentSequence
Constructs a new TemplateArgumentSequence without any TemplateArgument objects.
TemplateExecutionRepository - class uk.ac.ic.doc.automed.TemplateExecutionRepository.
Manipulate the Template Execution Repository and supply the methods to invoke template transformations
TemplateExecutionRepository() - Constructor for class uk.ac.ic.doc.automed.TemplateExecutionRepository
 
TemplateExecutionRepositoryException - exception uk.ac.ic.doc.automed.TemplateExecutionRepositoryException.
The class of exceptions generated by TemplateExecutionRepository.
TemplateExecutionRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.TemplateExecutionRepositoryException
 
TemplateTransformationRepository - class uk.ac.ic.doc.automed.TemplateTransformationRepository.
Manipulate the Template Transformation Repository, built template transformations.
TemplateTransformationRepository() - Constructor for class uk.ac.ic.doc.automed.TemplateTransformationRepository
 
TemplateTransformationRepositoryException - exception uk.ac.ic.doc.automed.TemplateTransformationRepositoryException.
The class of exceptions generated by TemplateTransformationRepository.
TemplateTransformationRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.TemplateTransformationRepositoryException
 
TemplateTransformationSyntaxRepository - class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository.
Manipulate the Template Transformation Syntax Repository, create new statements.
TemplateTransformationSyntaxRepository() - Constructor for class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
 
TemplateTransformationSyntaxRepositoryException - exception uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepositoryException.
The class of exceptions generated by TemplateTransformationSyntaxRepository.
TemplateTransformationSyntaxRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepositoryException
 
text() - Method in class uk.ac.bbk.dcs.automed.qproc.Node
 
TIME - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
TIME - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a time (on a particular day)
TIME_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
TML - class uk.ac.ic.doc.automed.tml.TML.
This class represents a Transformation in TML notation.
TML(int, Schema, Schema, SchemaObject, SchemaObject, String, String) - Constructor for class uk.ac.ic.doc.automed.tml.TML
 
TMLPathway - class uk.ac.ic.doc.automed.tml.TMLPathway.
This class represents a pathway as a sequence of transformations (see TMLTransformation), as opposed to a sequence of schemas as in TransformationPathway.
toASGList(ArrayList) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
toASGTuple(ArrayList) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
tokenize(String) - Static method in class uk.ac.ic.doc.automed.Util
Returns the tokens in s (as defined by default StringTokenizer) as an array
ToolTip - class uk.ac.ic.doc.automed.gui.ToolTip.
Customized ToolTip class.
ToolTip(Frame) - Constructor for class uk.ac.ic.doc.automed.gui.ToolTip
Creates a new ToolTip.
toPrintString() - Method in class uk.ac.ic.doc.automed.tml.TML
 
toString() - Method in class uk.ac.ic.doc.automed.reps.TransformationPathway
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Node
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Network
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
toString() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
toString() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
toString() - Method in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Convert this SQLQuery into a text equivalent.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Return a string representation of this AutoMedTime.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedString
Return a string representation of this AutoMedString.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Produce a string representation of the AutoMedTuple
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Produce a string representation of the result set, where {} indicates a set of values, and [] a list of values
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQueryToken
 
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return a string representation of this AutoMedInteger.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return a string representation of this AutoMedFloat.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Return a string representation of this AutoMedType.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Return a string representation of this AutoMedBoolean.
toString(StringBuffer) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Produce a string representation of the result set, where {} indicates a set of values, and [] a list of values
toString(StringBuffer) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Produce a string representation of the result set in a StringBuffer.
TRAN_ACTION_ADD - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "add"
TRAN_ACTION_CONTRACT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "contract"
TRAN_ACTION_DELETE - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "delete"
TRAN_ACTION_EXTEND - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "extend"
TRAN_ACTION_IDENT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "ident"
TRAN_ACTION_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
TRAN_ACTION_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
TRAN_ACTION_RENAME - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "rename"
TranOptimiserNaive - class uk.ac.ic.doc.automed.tml.TranOptimiserNaive.
 
TranOptimiserNaive() - Constructor for class uk.ac.ic.doc.automed.tml.TranOptimiserNaive
 
Transformation - class uk.ac.ic.doc.automed.reps.Transformation.
The Transformation class
Transformation(int, int, int, int, int, String, String, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.Transformation
Instantiates a transformation.
TransformationArgumentDefinition - class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition.
The class used to define a template transformation's arguments.
TransformationArgumentDefinition(int, int, String, String, String, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.TransformationArgumentDefinition
Constructs a new TransformationArgumentDefinition.
TransformationPathway - class uk.ac.ic.doc.automed.reps.TransformationPathway.
The TransformationPathway class
TransformationPathway() - Constructor for class uk.ac.ic.doc.automed.reps.TransformationPathway
 
transidExistsInCompositeTransformationExecution(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns false if the specified transformation is not found in the execution table, true otherwise.
translateToQueryText(StringBuffer) - Method in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Insert into a StringBuffer the text equivalent of this SQLQuery.
Translator - class uk.ac.bbk.dcs.automed.wrappers.Translator.
 
Translator() - Constructor for class uk.ac.bbk.dcs.automed.wrappers.Translator
 
TUPLE - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a tuple of atomic types
TYPE_ALTERNATION - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated. see Construct.CLASS_ALTERNATION
TYPE_CONSTRUCT - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme type of construct scheme
TYPE_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
TYPE_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
TYPE_NAME - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme type of construct scheme
TYPE_SEQUENCE - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated. see Construct.CLASS_SEQUENCE
TypeMismatchException - exception uk.ac.ic.doc.automed.reps.TypeMismatchException.
The class of exceptions generated by the uk.ac.ic.doc.automed.reps package.
TypeMismatchException(String) - Constructor for class uk.ac.ic.doc.automed.reps.TypeMismatchException
 

U

uk.ac.bbk.dcs.automed.qproc - package uk.ac.bbk.dcs.automed.qproc
 
uk.ac.bbk.dcs.automed.wrappers - package uk.ac.bbk.dcs.automed.wrappers
 
uk.ac.ic.doc.automed - package uk.ac.ic.doc.automed
 
uk.ac.ic.doc.automed.editor - package uk.ac.ic.doc.automed.editor
 
uk.ac.ic.doc.automed.gui - package uk.ac.ic.doc.automed.gui
 
uk.ac.ic.doc.automed.reps - package uk.ac.ic.doc.automed.reps
 
uk.ac.ic.doc.automed.tml - package uk.ac.ic.doc.automed.tml
 
uk.ac.ic.doc.automed.wrappers - package uk.ac.ic.doc.automed.wrappers
 
UNARY_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
UnexpectedTokenException - exception uk.ac.ic.doc.automed.reps.UnexpectedTokenException.
 
UnexpectedTokenException - exception uk.ac.ic.doc.automed.editor.UnexpectedTokenException.
 
UnexpectedTokenException(int, int, int, Syntax.Token) - Constructor for class uk.ac.ic.doc.automed.reps.UnexpectedTokenException
 
UnexpectedTokenException(int, int, int, Syntax.Token) - Constructor for class uk.ac.ic.doc.automed.editor.UnexpectedTokenException
 
UnexpectedTokenException(int, int, Syntax.Token) - Constructor for class uk.ac.ic.doc.automed.reps.UnexpectedTokenException
 
UnexpectedTokenException(int, int, Syntax.Token) - Constructor for class uk.ac.ic.doc.automed.editor.UnexpectedTokenException
 
UnexpectedTokenException(String) - Constructor for class uk.ac.ic.doc.automed.reps.UnexpectedTokenException
 
union(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an Schema (su) containing the union of SchemaObjects in this schema (s1) and the schema passed as a parameter (s2).
unionByName(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an SchemaObject array containing the union by name between this schema (s1) and the schema passed as a parameter (s2).
UPDATE - Static variable in class uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort of update on an exisinting object in the repository.
updateCanvas() - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
updateObjectScheme(int, int, int) - Method in class uk.ac.ic.doc.automed.reps.CompositeTransformation
Extends a Generalisation's scheme in the STR.
updateSchemaObjectNameHashMap() - Method in class uk.ac.ic.doc.automed.reps.Schema
Update this Schema's hashmap of how each SchemaObject in the schema is named.
UserAction - class uk.ac.ic.doc.automed.editor.UserAction.
 
UserAction() - Constructor for class uk.ac.ic.doc.automed.editor.UserAction
 
UserActionClass - class uk.ac.ic.doc.automed.editor.UserActionClass.
 
UserActionClass(Action) - Constructor for class uk.ac.ic.doc.automed.editor.UserActionClass
 
UserActionResult - class uk.ac.ic.doc.automed.editor.UserActionResult.
 
UserActionResult() - Constructor for class uk.ac.ic.doc.automed.editor.UserActionResult
 
userName - Static variable in class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
Util - class uk.ac.ic.doc.automed.Util.
 
Util() - Constructor for class uk.ac.ic.doc.automed.Util
 
Utility - class uk.ac.ic.doc.automed.reps.Utility.
Class offering utility methods for accessing a SchemaObject's scheme.
Utility() - Constructor for class uk.ac.ic.doc.automed.reps.Utility
 

V

VALUE_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A class of token that represents an atomic value in an expression
valueChanged(ListSelectionEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaTool
 
variable - Static variable in interface uk.ac.bbk.dcs.automed.qproc.Tags
 
VarToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
VERTICAL_EXT - Static variable in class uk.ac.ic.doc.automed.gui.Rhombus
 
Void - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
voidQuery() - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
 

W

WHERE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
The only field should contain a logical operator or a comparison
write() - Method in class uk.ac.ic.doc.automed.reps.TransformationPathway
 
write() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
write() - Method in class uk.ac.ic.doc.automed.reps.Schema
Write to the standard out a text representation of this Schema object, in a form suitable for human interpretation, and suitable for being used as the input to read()
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Model
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Model
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Construct
 

_

_action_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.QParser
Parse-action table.
_production_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.QParser
Production table.
_reduce_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.QParser
reduce_goto table.

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