A B C D E F G H I J K L M N O P Q R S T U V W X Y _

A

absolute(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
 
AbsoluteEuclideanClassifier - class uk.ac.ic.doc.automed.matching.modules.AbsoluteEuclideanClassifier.
 
AbsoluteEuclideanClassifier(Cluster[], double) - Constructor for class uk.ac.ic.doc.automed.matching.modules.AbsoluteEuclideanClassifier
 
AbstractModule - class uk.ac.ic.doc.automed.matching.modules.AbstractModule.
 
AbstractModule() - Constructor for class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
AccessMethod - class uk.ac.ic.doc.automed.reps.AccessMethod.
The AccessMethod class describes how a particular database presented by a Schema can be accessed by an AutoMed application, using a particular Protocol.
Accessories - class uk.ac.ic.doc.automed.templates.gui.Accessories.
 
Accessories() - Constructor for class uk.ac.ic.doc.automed.templates.gui.Accessories
 
action - Variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
ACTION_ADD - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "add"
ACTION_ADD_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_CONTRACT - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "contract"
ACTION_CONTRACT_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_DELETE - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "delete"
ACTION_DELETE_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_EXTEND - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "extend"
ACTION_EXTEND_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_IDENT - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "ident"
ACTION_IDENT_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
ACTION_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
action_obj - Variable in class uk.ac.bbk.dcs.automed.qproc.EnvParser
Instance of action encapsulation class.
action_obj - Variable in class uk.ac.bbk.dcs.automed.qproc.QParser
Instance of action encapsulation class.
ACTION_RENAME - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
Transformation action "rename"
ACTION_RENAME_STR - Static variable in class uk.ac.ic.doc.automed.reps.Transformation
 
action_table() - Method in class uk.ac.bbk.dcs.automed.qproc.EnvParser
Access to parse-action table.
action_table() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Access to parse-action table.
actionARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
actionARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
actionARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
actionName - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
actionName - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
actionName - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.ReportException
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.editor.UserAction
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaTool
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.gui.LoadDialog
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.gui.IntegrateDialog
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.gui.ArgumentsDialog
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.gui.ArgPane
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaFrame
 
actionPerformed(ActionEvent) - Method in class uk.ac.ic.doc.automed.templates.gui.LoadDialog
 
add - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
ADD - Static variable in class uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort of addition to the repository.
add(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the sum of two AutoMedFloats.
add(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the sum of two AutoMedIntegers.
add(BidirectionalDegree) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
ADD(Construct, Object[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
ADD(Construct, Object[], TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
ADD(Construct, Object[], TemplateCompilerSimulator.CONSTRAINTS, TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
ADD(Construct, Object[], TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
ADD(Construct, Object[], TemplateCompilerSimulator.FUNCTION, TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
add(int, ModelingStatement) - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Inserts the specified statement at the specified position(program counter) in this program.
add(ModelingStatement) - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Appends the specified statement to the end of this ModelingProgram.
addArgument(Schema) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
addArgument(SchemaObject) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
addArgument(SchemaObject[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
addArgument(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
addArgument(String[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
addArrayToList(Object[], List) - Static method in class uk.ac.ic.doc.automed.Util
Adds in order all elements in the source array to the destination List and returns the destination list so that the method can be used as an argument to a method call.
addAutoMedTuple(AutoMedTuple) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Assert that a certain row number exists in a result
addAuxiliaryModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.Aggregator
 
addChild(TreeNode) - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
Adds a node to the set of children of the node
addCommand(String, Class, String) - Static method in class uk.ac.ic.doc.automed.DSR
Looks for a public method with the signature doCommand(String[] args) in the class methodClass and adds it to the commands that can be invoked from the CLI.
addConstraint(HDMConstraint) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
addConstraintScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Constraint schemes can only be added to constructs of type Nodal, Link-Nodal, Link or Constraint Defaults to isKey = true, 1..1
addConstraintScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addConstraintScheme(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addConstraintScheme(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addEdge(Edge) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Takes an Edge struture and stores this in the database.
addEdgeNameScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
EdgeName schemes can only be added to LINK and LINK-NODAL construct types.
addEdgeNameScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addElement(ElementVectorRepresentation) - Method in class uk.ac.ic.doc.automed.matching.modules.Clusterer
 
addElement(ElementVectorRepresentation) - Method in class uk.ac.ic.doc.automed.matching.modules.Cluster
 
addElement(HDMElement) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
addElements(ElementVectorRepresentation[]) - Method in class uk.ac.ic.doc.automed.matching.modules.Clusterer
 
addFoldFunction(FoldFunction) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunctionTable
 
addFunction(String, BuiltInFunction) - Method in class uk.ac.bbk.dcs.automed.qproc.FunctionTable
Adds a string and function pair to the table.
addGenericRoot(Document, String) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Method that adds a generic root named newRootName on top of the old root and returns the new document.
addGraphNode(DirectedGraphNode) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
Adds a node in the graph.
addIncomingEdge(DirectedGraphNode) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
Adds a node in the set of incoming edges of the calling node.
addInstance(String) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
addLabelScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Label schemes are scheme arguments that have no corresponding HDM (except maybe through automatic HDM node and edge names if the label is defined as key for its construct) Defaults to isKey = true, 1..1
addLabelScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addLabelScheme(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addLabelScheme(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addLayoutComponent(String, Component) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
addModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.Filter
 
addNetworkChangeListener(NetworkChangeListener) - Method in class uk.ac.ic.doc.automed.reps.Network
 
addNetworksListener(NetworksListener) - Static method in class uk.ac.ic.doc.automed.reps.Network
 
addNewInputItem(boolean, int) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
addNewInputItemAndRedisplay(boolean, int) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
addNode(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Takes a node type and a value and adds to the database
addNodeNameScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
NodeName schemes can only be added to NODAL and LINK-NODAL construct types.
addNodeNameScheme(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addNodeNameScheme(int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addNodeNameScheme(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addNonAuxiliaryModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.Aggregator
 
addObject(DefaultMutableTreeNode, Object) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
addObject(DefaultMutableTreeNode, Object, boolean) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
addObject(DefaultMutableTreeNode, Object, int, boolean) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
addObject(Object) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
Add child to the currently selected node.
addOutgoingEdge(DirectedGraphNode) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
Adds a node in the set of outgoing edges of the calling node.
addPrefix(String, String) - Static method in class uk.ac.ic.doc.automed.Util
Adds the prefix to the beginning of each line in message
addQuerySchemaObjectsToConditions(ArrayList) - Method in class uk.ac.ic.doc.automed.tml.TML
 
addReferencedArgument(TTemplateInputArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
addReferenceScheme(Construct) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReferenceScheme(Construct, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReferenceScheme(Construct, int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReferenceScheme(Construct, int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
addReloadHook(Method) - Static method in class uk.ac.ic.doc.automed.DSR
 
addSchemaChangeListener(SchemaChangeListener) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
addSchemasListener(SchemasListener) - Static method in class uk.ac.ic.doc.automed.reps.Schema
 
AddStatement - class uk.ac.ic.doc.automed.templates.wrapper.AddStatement.
 
AddStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.AddStatement
 
addSubGraph(DirectedGraph) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
Adds a subGraph in the set of subGraphs.
addToNegPostString(String) - Method in class uk.ac.ic.doc.automed.tml.TML
 
addToNegPreString(String) - Method in class uk.ac.ic.doc.automed.tml.TML
 
addToPosPostString(String) - Method in class uk.ac.ic.doc.automed.tml.TML
 
addToPosPreString(String) - Method in class uk.ac.ic.doc.automed.tml.TML
 
addTree(TreeNode) - Method in class uk.ac.bbk.dcs.automed.graph.Forest
Adds a tree to the forest.
addVertex(HDMElement) - Method in class uk.ac.ic.doc.automed.reps.HDMEdge
 
Aggregator - class uk.ac.ic.doc.automed.matching.Aggregator.
 
Aggregator(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.Aggregator
 
ALIAS - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Define an alias of a table.
ALIAS(TemplateCompilerSimulator.ITEM, String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
aliases - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
ALL - Static variable in class uk.ac.ic.doc.automed.editor.MatchingTool
 
allArguments - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
allArgumentsSet - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
alternation - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
am - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
AMQfromIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.wrappers.Translator
 
AMQfromIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator
 
And - class uk.ac.bbk.dcs.automed.qproc.functions.And.
 
AND - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
SQL logical AND binary operator for use within WHERE expressions
And() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.And
 
ANY - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
appearsInSchemeOf(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Determines whether or not the schema object appears anywhere in the scheme of another schema object.
Append - class uk.ac.bbk.dcs.automed.qproc.functions.Append.
 
Append() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Append
 
apply - Static variable in class uk.ac.bbk.dcs.automed.qproc.Cell
 
apply(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.PatternRule
 
apply(Cell) - Method in interface uk.ac.bbk.dcs.automed.qproc.optimise.Rule
 
apply(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldNilRule
 
applyAddTransformation(Construct, Object[], String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an ADD transformation.
applyAddTransformation(Construct, Object[], String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an ADD transformation.
applyAddTransformation(Construct, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
applyContractTransformation(SchemaObject, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a CONTRACT transformation.
applyContractTransformation(SchemaObject, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a CONTRACT transformation.
applyDeleteTransformation(SchemaObject, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a DELETE transformation.
applyDeleteTransformation(SchemaObject, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a DELETE transformation.
applyExtendTransformation(Construct, Object[], String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an EXTEND transformation.
applyExtendTransformation(Construct, Object[], String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying an EXTEND transformation.
applyExtendTransformation(Construct, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
applyIdent(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
applyRenameTransformation(SchemaObject, Object[]) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a RENAME transformation.
applyRenameTransformation(SchemaObject, Object[], String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema which is the result of applying a RENAME transformation.
applyRetract(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
Arc - class uk.ac.ic.doc.automed.gui.Arc.
 
Arc() - Constructor for class uk.ac.ic.doc.automed.gui.Arc
 
areCompatible(SchemaElementPair) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
areCompatible(SchemaElementPair[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
areRelated(SchemaObject[], SchemaObject[], SemanticRelationship, boolean) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
areRelativesMaximal() - Method in class uk.ac.ic.doc.automed.reps.Network
 
areSchemasIntegrated() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
ARG_ACTION_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for action
ARG_ARGSEQUENCES_IN_FOREACH - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the FOREACH_STATEMENT for argument sequence ID of the lists to iterate
ARG_ARGSINGLETONS_IN_FOREACH - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the FOREACH_STATEMENT for argument sequence ID of singleton arguments
ARG_ARGUMENTS_IN_INVOCATION - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the INVOCATION_STATEMENT for the argument sequnce ID
ARG_CID_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for CID(Construct ID)
ARG_CONCATENATIONOP_IN_DEFINE_STRING - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position int the DEFINE_STRING statement for concatenation operator of the list of string fragments.
ARG_CONSTRAINTS_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for constraints
ARG_FROMOBJ_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for FromObject OBID
ARG_FROMSCHEMA_IN_CONTRACT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the CONTRACT_STATEMENT for the initial schema ID
ARG_FROMSCHEMA_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for FromSchema SID
ARG_FUNCTION_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for function
ARG_INDEX_IN_INDEX_LIST - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
ARG_ISTEMP_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for IsTemp
ARG_LIST_IN_INDEX_LIST - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
ARG_LISTPOINTER_IN_CREATE_LIST - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
ARG_LISTPOINTER_IN_DEFINE_STRING - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the DEFINE_STRING statement for the (pointer to the) list of string fragments that will make up the resulting string when concatenated
ARG_OBID_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for OBID(Object ID)
ARG_OBID_IN_SCHEMELIST - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
ARG_OBJECT_IN_CONTRACT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the CONTRACT_STATEMENT for object ID
ARG_RESULT_IN_DEFINE_STRING - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the DEFINE_STRING statement for the resulting string
ARG_RESULT_IN_INDEX_LIST - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
ARG_RESULT_IN_SCHEMELIST - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
ARG_RETURNED_ARGS_START_IN_FOREACH - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the FOREACH_STATEMENT where the returned argument sequences start
ARG_SCHEMA_IN_CREATE_LIST - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
ARG_SCHEMA_IN_DEFINE_STRING - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position int the DEFINE_STRING statement for the initial and final schema.
ARG_SCHEMA_IN_FOREACH - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the FOREACH_STATEMENT for current schema SID
ARG_SCHEMA_IN_INDEX_LIST - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
ARG_SCHEMA_IN_SCHEMELIST - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
ARG_SCHEME_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for the argument sequence ID of the object's scheme
ARG_SCHEMEID_IN_EXTGENSCHEME - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the EXTGENSCHEME_STATEMENT for the argument sequence ID of the generalisation's scheme
ARG_SCHEMEPOS_IN_EXTGENSCHEME - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the EXTGENSCHEME_STATEMENT for the position in the scheme where to start extending
ARG_SID_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for SID(Schema ID)
ARG_SUBENTITIES_IN_EXTGENSCHEME - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the EXTGENSCHEME_STATEMENT for the argument sequence ID of the sub-entities
ARG_TOOBJ_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for ToObject OBID
ARG_TOSCHEMA_IN_CONTRACT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the CONTRACT_STATEMENT for the final schema ID
ARG_TOSCHEMA_IN_PRIMITIVE - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the PRIMITIVE_TRANSFORMATION_STATEMENT for ToSchema SID
ARG_TRANS_IN_FOREACH - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the FOREACH_STATEMENT for template transformation ID
ARG_TRANSFORMATION_IN_INVOCATION - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the INVOCATION_STATEMENT for the template transformation's ID
ARG_VALUE_IN_NEWOBJECT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Position in the NEW_OBJECT_STATEMENT for the object's value
ArgPane - class uk.ac.ic.doc.automed.gui.ArgPane.
Panel for defining an argument sequence.
ArgPane(String[]) - Constructor for class uk.ac.ic.doc.automed.gui.ArgPane
Creates a new ArgPane.
ArgumentsDialog - class uk.ac.ic.doc.automed.gui.ArgumentsDialog.
A dialog that can be used for the argument assignment.
ArgumentsDialog(Frame, ActionListener, String, boolean, String[]) - Constructor for class uk.ac.ic.doc.automed.gui.ArgumentsDialog
Creates a new ArgumentsDialog.
ArrowIcon - class uk.ac.ic.doc.automed.gui.ArrowIcon.
An icon that's a picture of an arrow.
ArrowIcon(int) - Constructor for class uk.ac.ic.doc.automed.gui.ArrowIcon
 
ASG - class uk.ac.bbk.dcs.automed.qproc.ASG.
Every IQL query is internally represented as an Abstract Syntax Graph (ASG).
ASG(Cell) - Constructor for class uk.ac.bbk.dcs.automed.qproc.ASG
 
ASG(File) - Constructor for class uk.ac.bbk.dcs.automed.qproc.ASG
 
ASG(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.ASG
 
askForConstraints(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForConstraintsList(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForConstraintsList(String, TemplateCompilerSimulator.LIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForFunction(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForFunctionList(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForFunctionList(String, TemplateCompilerSimulator.LIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForName(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForNameList(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForNameList(String, TemplateCompilerSimulator.LIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForObject(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForObject(String, Construct) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForObjectList(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForObjectList(String, Construct) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForObjectList(String, Construct, TemplateCompilerSimulator.LIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
askForObjectList(String, TemplateCompilerSimulator.LIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
assertProtocol(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the Protocol with a certain name, creating it if it does not already exist..
AT_LEAST_ONE - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
at(int) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
atDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.STR
Return true if the debug level set by STR.setDebugLevel(int) is at least at a certain level.
atDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Determine is debug is at or above a certain level.
atSectionDebugLevel(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Tests whether the section of code has been set to at least the debug level specified.
attribute - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
AUTOMED_SQL_MODEL_COLUMN - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_FOREIGN_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_INDEX - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_PRIMARY_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AUTOMED_SQL_MODEL_TABLE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
AutoMedBoolean - class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean.
Provides generic representation boolean values.
AutoMedBoolean() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Create a new AutoMedBoolean that is null in value.
AutoMedBoolean(boolean) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Create a new AutoMedBoolean
AutoMedBoolean(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Create a new AutoMedBoolean from a String value.
AutoMedException - exception uk.ac.ic.doc.automed.AutoMedException.
The class root of all AutoMed generated exceptions.
AutoMedException(String) - Constructor for class uk.ac.ic.doc.automed.AutoMedException
Creates an AutoMedException.
AutoMedFloat - class uk.ac.ic.doc.automed.wrappers.AutoMedFloat.
Provides generic representation of floating values with abritrary precision.
AutoMedFloat() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Create a new AutoMedFloat that is null in value
AutoMedFloat(BigDecimal) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Create a new AutoMedFloat from a BigDecimal.
AutoMedFloat(double, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Create a new AutoMedFloat from a 64 bit floating point value.
AutoMedFloat(float, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Create a new AutoMedFloat from a 32 bit floating point value.
AutoMedID - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
AutoMedInteger - class uk.ac.ic.doc.automed.wrappers.AutoMedInteger.
Provides generic representation of integer values with up to 64 bit precision.
AutoMedInteger() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Create a new AutoMedInteger that is a null value
AutoMedInteger(int, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Create a new AutoMedInteger from a 32 bit integer value.
AutoMedInteger(long, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Create a new AutoMedInteger
automedModelName - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
AutoMedQuery - class uk.ac.ic.doc.automed.wrappers.AutoMedQuery.
A generic representation of query expressions as trees, where each AutoMedQuery has an operator type, and 0 or more fields that have a field type
AutoMedQuery(AutoMedQueryToken, Object[]) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
AutoMedQueryToken - class uk.ac.ic.doc.automed.wrappers.AutoMedQueryToken.
A generic representation of query langauge tokens
AutoMedResult - class uk.ac.ic.doc.automed.wrappers.AutoMedResult.
Provides a representation of the data associated with a scheme in an AutoMed Schema.
AutoMedResult(int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Create a new AutoMedResult with a fixed size of tuple in the resultCache
AutoMedString - class uk.ac.ic.doc.automed.wrappers.AutoMedString.
Provides generic representation of string values of abritrary size.
AutoMedString(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedString
Create a new AutoMedString
AutoMedTime - class uk.ac.ic.doc.automed.wrappers.AutoMedTime.
Provides generic representation of time values in GMT.
AutoMedTime() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Create a new AutoMedTime that is a null value
AutoMedTime(Date, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Create a new AutoMedTime
AutoMedTime(long, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Create a new AutoMedTime, measured as the number of milliseconds since 1st January 1970, 00:00:00 GMT
AutoMedTuple - class uk.ac.ic.doc.automed.wrappers.AutoMedTuple.
A structure to hold one tuple of data, to be used by AutoMedResult as the basis for storing sets, lists or bags of tuples.
AutoMedTuple(AutoMedResult, int, int) - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Create a new tuple belonging to row i and with nc attributes
AutoMedType - class uk.ac.ic.doc.automed.wrappers.AutoMedType.
Provides a base for the representation of basic types supported by AutoMed.
AutoMedType() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedType
 
AutoMedWrapper - class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper.
An AutoMedWrapper represents an open connection to a datasource.
AutoMedWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
AutoMedWrapperFactory - class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory.
An AutoMedWrapperFactory class able to produce AutoMedWrapper instances, together with any data that the wrapper requires to be present in the repository.
AutoMedWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
AutoRepException - exception uk.ac.ic.doc.automed.reps.AutoRepException.
The class of exceptions generated by the uk.ac.ic.doc.automed.reps package.
AutoRepException(String) - Constructor for class uk.ac.ic.doc.automed.reps.AutoRepException
Creates an AutoRepException.
AutoRepException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.reps.AutoRepException
Creates an AutoRepException.
Average - class uk.ac.bbk.dcs.automed.qproc.functions.Average.
 
Average() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Average
 
awf - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
awf - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 

B

BadSchemaException - exception uk.ac.ic.doc.automed.reps.BadSchemaException.
The class of exceptions generated when the contents of an intentional schema materialized via a particular transformation pathway are not the same as those of the same schema materialized via its default transformation pathway (path to the cloesest extensional schema).
BadSchemaException(String, Schema) - Constructor for class uk.ac.ic.doc.automed.reps.BadSchemaException
Creates a BadSchemaException.
BagIntersect - class uk.ac.bbk.dcs.automed.qproc.functions.BagIntersect.
 
BagIntersect() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.BagIntersect
 
banner() - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Prints a line of 90 stars.
banner(int) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Prints a line of num stars.
Bar - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
baseName - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
BidirectionalDegree - class uk.ac.ic.doc.automed.matching.BidirectionalDegree.
 
BidirectionalDegree(double, double) - Constructor for class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
bidirectionalDegrees - Variable in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
BidirectionalMap - class uk.ac.ic.doc.automed.matching.BidirectionalMap.
 
BidirectionalMap(double, double, double) - Constructor for class uk.ac.ic.doc.automed.matching.BidirectionalMap
 
BINARY_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
blockStatements - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
BOOLEAN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
BOOLEAN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a boolean true/false value.
BOOLEAN_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
booleanValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Return a boolean representation of this AutoMedBoolean.
BoolToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
bounds - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
Box - class uk.ac.ic.doc.automed.gui.Box.
 
Box() - Constructor for class uk.ac.ic.doc.automed.gui.Box
 
BREAK_ICON - Static variable in class uk.ac.ic.doc.automed.templates.gui.Accessories
 
breakList() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
build(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
buildTemplate() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
BuiltInFunction - interface uk.ac.bbk.dcs.automed.qproc.BuiltInFunction.
Interface class for all functions.

C

cacheWrapper() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Cache this AutoMedWrapper as being able to provide the implementation of an AccessMethod used to create the wrapper.
calcRectangleConnector(Rectangle, Rectangle) - Static method in class uk.ac.ic.doc.automed.editor.EditorPanel
Compute three points, the first two of which represent a rectangle that forms a box `between' the supplied rectangles, and the third point represents the `sign' of the relationship between the rectangles.
callConfirmMessagePane(String) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
callErrorMessagePane(String) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
CallToWrapper - class uk.ac.bbk.dcs.automed.qproc.functions.CallToWrapper.
 
CallToWrapper() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.CallToWrapper
 
cancelButton - Variable in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
caseCommand(String) - Static method in class uk.ac.ic.doc.automed.Util
converts the argument into lower case with the first letter in uppercase
Cell - class uk.ac.bbk.dcs.automed.qproc.Cell.
Every node in an ASG is a Cell, so one has to use this class in order to perform any operations on an ASG
Cell(int, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Cell
 
Cell(int, Object, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Cell
 
Cell(int, Object, Object, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Cell
 
Cell(Object, Object) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Cell
 
Cell(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Cell
 
centre - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
characters(char[], int, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
checkEditable() - Method in class uk.ac.ic.doc.automed.reps.Schema
Checks whether a schema is editable.
CheckExistenceModule - class uk.ac.ic.doc.automed.matching.modules.CheckExistenceModule.
 
CheckExistenceModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.CheckExistenceModule
 
chooseBackgroundColor(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
chooseForegroundColor(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
chooseTextColor(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
cid - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
cidExists(int) - Static method in class uk.ac.ic.doc.automed.MDR
Checks if a particular construct identifier (CID) exists in the MDR.
CLASS_ALTERNATION - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct which acts as a place holder for one of list of alternative constructs.
CLASS_CONSTRAINT - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for constraints, i.e.
CLASS_LINK - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for linking constructs, i.e.
CLASS_LINK_NODAL - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for link-nodal constructs, i.e.
CLASS_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CLASS_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CLASS_NODAL - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct for nodal constructs, i.e.
CLASS_SEQUENCE - Static variable in class uk.ac.ic.doc.automed.reps.Construct
Class of construct which acts as a place holder for a list of constructs.
Classifier - interface uk.ac.ic.doc.automed.matching.modules.Classifier.
 
classify(ElementVectorRepresentation) - Method in class uk.ac.ic.doc.automed.matching.modules.RelativeEuclideanClassifier
 
classify(ElementVectorRepresentation) - Method in interface uk.ac.ic.doc.automed.matching.modules.Classifier
 
classify(ElementVectorRepresentation) - Method in class uk.ac.ic.doc.automed.matching.modules.AbsoluteEuclideanClassifier
 
CLAUSE_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
clear() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Removes all of the statements from this ModelingProgram.
clear() - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
Remove all nodes except the root node.
clearAccessMethods() - Static method in class uk.ac.ic.doc.automed.reps.AccessMethod
 
clearFeatures() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Clear all the features for this factory.
clearSchemas() - Static method in class uk.ac.ic.doc.automed.reps.Schema
This method empties all the cached Schema, SchemaObject, Transformation, AccessMethods and Protocols that have been cached.
clone() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Returns a deep copy of this ModelingProgram instance.
clone() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
 
close() - Method in class uk.ac.ic.doc.automed.editor.Gui
 
closeScheme - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
Cluster - class uk.ac.ic.doc.automed.matching.modules.Cluster.
 
Cluster() - Constructor for class uk.ac.ic.doc.automed.matching.modules.Cluster
 
Clusterer - class uk.ac.ic.doc.automed.matching.modules.Clusterer.
 
Clusterer() - Constructor for class uk.ac.ic.doc.automed.matching.modules.Clusterer
 
ClustererClassifier - class uk.ac.ic.doc.automed.matching.modules.ClustererClassifier.
 
ClustererClassifier() - Constructor for class uk.ac.ic.doc.automed.matching.modules.ClustererClassifier
 
clusters - Variable in class uk.ac.ic.doc.automed.matching.modules.Clusterer
 
COLLECTING - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
COLLECTS(TemplateCompilerSimulator.ITEM) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
colon - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
Colon - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
Colon - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
COLUMN_POSITION - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model the position of a column in a table as part of a column in any Schema the factory generates
columns - Variable in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
combineRelationships(SemanticRelationship, SemanticRelationship) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
comma - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
Comma - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
Comma - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
CommandLineDriver - class uk.ac.ic.doc.automed.editor.CommandLineDriver.
 
CommandLineDriver() - Constructor for class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
CommandLineException - exception uk.ac.ic.doc.automed.editor.CommandLineException.
 
CommandLineException(String) - Constructor for class uk.ac.ic.doc.automed.editor.CommandLineException
 
commit() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
ComparableExact - interface uk.ac.ic.doc.automed.matching.modules.ComparableExact.
 
compare(Object, Object) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
compare(Object, Object) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
compare(Object, Object) - Method in class uk.ac.ic.doc.automed.matching.Instance
 
compareNodes(Cell, Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.functions.Comparisons
 
comparePrecision(SchemaElement, SchemaElement) - Static method in class uk.ac.ic.doc.automed.matching.modules.PrecisionModule
 
compareRange(ComparableExact, ComparableExact, ComparableExact, ComparableExact) - Static method in class uk.ac.ic.doc.automed.matching.modules.PrecisionModule
 
compareTo(Object) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
compareTo(Object) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
compareTo(Object) - Method in interface uk.ac.ic.doc.automed.matching.modules.ComparableExact
 
Comparisons - class uk.ac.bbk.dcs.automed.qproc.functions.Comparisons.
 
Comparisons() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Comparisons
 
compositeDescription - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
compositeName - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
CompositeTransformation - class uk.ac.ic.doc.automed.templates.CompositeTransformation.
The CompositeTransformation class.
CompositeTransformation(String, String, boolean) - Constructor for class uk.ac.ic.doc.automed.templates.CompositeTransformation
Constructs a new CompositeTransformation without any argument definitions nor program.
CompositeTransformationRecord - class uk.ac.ic.doc.automed.templates.CompositeTransformationRecord.
 
CompositeTransformationRecord() - Constructor for class uk.ac.ic.doc.automed.templates.CompositeTransformationRecord
 
CompositeTransformationRecord(Schema, Vector) - Constructor for class uk.ac.ic.doc.automed.templates.CompositeTransformationRecord
 
Comprehension - class uk.ac.bbk.dcs.automed.qproc.functions.Comprehension.
 
Comprehension() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Comprehension
 
concat(Object[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
concat(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
concat(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
ConfigException - exception uk.ac.ic.doc.automed.editor.ConfigException.
 
ConfigException(String) - Constructor for class uk.ac.ic.doc.automed.editor.ConfigException
 
ConfigException(String, int, String) - Constructor for class uk.ac.ic.doc.automed.editor.ConfigException
 
confirmOptimise(TML, TML, String) - Method in class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
connect() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
Connect to a JDBC database in the standard way.
connect() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Use the connection details held with this wrapper to connect to the data source.
connect() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
Connect to a semistructured textfile --- i.e.
connect() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
connect() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
 
connect() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
If connecting to the HDM store without a schema being passed assume same data source as for the MDR
connect(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Connect to the database using the access method for the named schema.
connect(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Connect to the database using the access method for the named schema using the access method in the repository for the schema and the password supplied.
constant - Static variable in class uk.ac.bbk.dcs.automed.qproc.Cell
 
Constants - interface uk.ac.ic.doc.automed.Constants.
Deprecated. use constants in individual classes instead, such as Construct .CLASS_MINIMUM instead of CONSTRUCT_CLASS_MINIMUM
constrain(Component, int, int, int, int) - Method in class uk.ac.ic.doc.automed.editor.GUITool
 
constrain(Component, int, int, int, int, int, int, double, double) - Method in class uk.ac.ic.doc.automed.editor.GUITool
 
constrain(Component, int, int, int, int, int, int, double, double, int, int, int, int) - Method in class uk.ac.ic.doc.automed.editor.GUITool
 
constraint - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
CONSTRAINTS - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
constraintsARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
constraintsARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
construct - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
construct - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
Construct - class uk.ac.ic.doc.automed.reps.Construct.
The Construct class
CONSTRUCT - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
CONSTRUCT - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
CONSTRUCT_CLASS_CONSTRAINT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for constraints
CONSTRUCT_CLASS_LINK - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for linking constructs
CONSTRUCT_CLASS_LINK_NODAL - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for link-nodal constructs
CONSTRUCT_CLASS_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
CONSTRUCT_CLASS_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
CONSTRUCT_CLASS_NODAL - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Class of construct for nodal constructs
CONSTRUCT_TYPE_ANY - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRUCT_TYPE_ARRAY - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
CONSTRUCT_TYPE_REFERENCE - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
Construct(Model, int, String, int, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.Construct
Instantiates a Construct, which is assumed to already exist in the STR.
ConstructAny - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
constructARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
ConstructArray - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
constructor - Static variable in class uk.ac.bbk.dcs.automed.qproc.Cell
 
ConstructReference - Static variable in class uk.ac.ic.doc.automed.reps.Construct
 
ConstructScheme - class uk.ac.ic.doc.automed.reps.ConstructScheme.
The ConstructScheme class
ConstructScheme(int, int, int, Construct, boolean, int, int, int) - Constructor for class uk.ac.ic.doc.automed.reps.ConstructScheme
Instantiates a new ConstructScheme object.
ConstructSchemeSyntaxException - exception uk.ac.ic.doc.automed.reps.ConstructSchemeSyntaxException.
 
ConstructSchemeSyntaxException(String) - Constructor for class uk.ac.ic.doc.automed.reps.ConstructSchemeSyntaxException
 
ConstructWithModelingProgram - class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram.
The class describing Construct objects together with their graphical representations/ModelingProgram objects
ConstructWithModelingProgram(Model, int, String, int, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
Creates a new Construct.
ConstToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
contains(Node) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns whether or not the network contains the supplied node.
contains(Point) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
contains(Point) - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
contains(Point) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
contains(Schema) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns whether or not the network contains the supplied schema
contains(SchemaElementPair[], SchemaElement[], int) - Static method in class uk.ac.ic.doc.automed.matching.Integrator
 
contains(SchemaElementPair[], SchemaElementPair[]) - Static method in class uk.ac.ic.doc.automed.matching.Integrator
 
contains(String) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns whether or not the network contains the named schema
containsInstance(String) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
containsRelationship(SemanticRelationship[], SemanticRelationship) - Static method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
containsSchemaObject(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Determine if the SchemaObject that has the supplied name exists in this Schema
contract - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
CONTRACT_STATEMENT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Statement to contract an object
CONTRACT() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
CONTRACT(TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
CONTRACT(TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
CONTRACT(TemplateCompilerSimulator.FUNCTION, TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
CONTRACT(TemplateCompilerSimulator.OBJECT) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
CONTRACT(TemplateCompilerSimulator.OBJECT, TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
CONTRACT(TemplateCompilerSimulator.OBJECT, TemplateCompilerSimulator.CONSTRAINTS, TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
CONTRACT(TemplateCompilerSimulator.OBJECT, TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
CONTRACT(TemplateCompilerSimulator.OBJECT, TemplateCompilerSimulator.FUNCTION, TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
ContractStatement - class uk.ac.ic.doc.automed.templates.wrapper.ContractStatement.
 
ContractStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.ContractStatement
 
copyOfASG() - Method in class uk.ac.bbk.dcs.automed.qproc.ASG
Creates and returns an exact copy of the ASG.
copyOfGraph() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns an exact copy of the ASG
Count - class uk.ac.bbk.dcs.automed.qproc.functions.Count.
 
count() - Method in class uk.ac.ic.doc.automed.matching.modules.Vectors
 
Count() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Count
 
countAppearances(String, char) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
CREATE_LIST_STATEMENT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
CREATE_LIST(TemplateCompilerSimulator.ITEM[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
createAccessMethod(int, String, int, String, String, String, String, int) - Static method in class uk.ac.ic.doc.automed.STR
Add the access methods of a schema to the STR.
Precondition: The schema whose access methods are being added must already exist in the schemas table.
createAccessMethod(Schema, String, Protocol, String, String) - Static method in class uk.ac.ic.doc.automed.reps.AccessMethod
Used to created an AccessMethod where no password is required to access the data source.
createAccessMethod(Schema, String, Protocol, String, String, String, String, int) - Static method in class uk.ac.ic.doc.automed.reps.AccessMethod
Creates a new access method.
createAddTransformation(Schema, Construct, Object[], String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a new ADD transformation.
createAddTransformation(Schema, Construct, Object[], String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an ADD transformation.
createArc() - Static method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
createArgument(int, int) - Method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Constructs a new TemplateArgument and adds it to this TemplateArgumentSequence.
createArgument(int, int, int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Adds a new argument to a sequence of arguments
createArgument(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Adds a new argument to a sequence of arguments
createArgument(int, String) - Method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Constructs a new TemplateArgument and adds it to this TemplateArgumentSequence.
createArgument(int, String) - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
Constructs a new RuntimeArgument and adds it to this RuntimeArgumentSequence.
createArgument(int, TemplateArgument) - Method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Constructs a new TemplateArgument and adds it to this TemplateArgumentSequence.
createArgument(int, TemplateArgumentSequence, int) - Method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Constructs a new TemplateArgument and adds it to this TemplateArgumentSequence.
createArgumentDefinition(int, String, boolean) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Defines an argument for this CompositeTransformation.
createArgumentDefinition(int, String, boolean, int, int, int, int) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Defines an argument for this CompositeTransformation.
createArgumentDefinition(int, String, String, String) - Method in class uk.ac.ic.doc.automed.templates.Statement
Defines an argument for this Statement.
createArgumentDefinition(int, String, String, String, boolean) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Defines an argument for this CompositeTransformation.
createArgumentInRepository() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
createArgumentSequence(Vector) - Method in class uk.ac.ic.doc.automed.gui.SchemaTool
 
createArgumentSequence(Vector) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
createAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Define a relational modelling language for the SQL standard which is an "AutoMed" oriented modelling language..
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Create an AutoMed oriented schema from the source oriented schema.
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
Create an AutoMed oriented schema from the source oriented schema.
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
createAutoMedSchema(AutoMedWrapper, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
createBox() - Static method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
createClusters() - Method in class uk.ac.ic.doc.automed.matching.modules.MapDisplay
 
createClusters() - Method in class uk.ac.ic.doc.automed.matching.modules.JSomClusterer
 
createClusters() - Method in class uk.ac.ic.doc.automed.matching.modules.Clusterer
 
createCompositeArgument(CompositeTransformation) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
createCompositeTransformation(String, String, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Adds a new composite transformation to the TTR.
createCompositeTransformationDefinition(int, int, String, boolean, int, int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
 
createCompositeTransformationDefinition(int, int, String, String, String, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Adds a new argument to the composite transformation's definition of arguments.
createCompositeTransformationExecution(int, int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Adds a statement to the composite transformation's execution
createCompositeTransformationInvocation(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Creates a composite transformation's invocation
createCompositeTransformationProgram(int, int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Adds a new statement to a composite transformation's program
createCompositeTransformationReturnedValuesDefinition(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Defines where the transformation's returned values are stored.
createConstruct(int, String, int, boolean) - Static method in class uk.ac.ic.doc.automed.MDR
Creates a new construct for a modelling language
createConstruct(String, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Model
Creates a new construct and add to the model.
createConstructModeling(int, int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Adds a new method invocation to a construct's modeling program
createConstructScheme(int, Construct, boolean, int, int, int) - Method in class uk.ac.ic.doc.automed.reps.Construct
Semi-deprecated! See the various addXxxScheme() methods.
createConstructScheme(int, int, int, boolean, int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
Creates a new constructScheme argument for a construct
createContractTransformation(Schema, SchemaObject, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an CONTRACT transformation.
createContractTransformation(Schema, SchemaObject, String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an CONTRACT transformation.
createDBtables() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 
createDBtables(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Check to see if the repository tables are in place on the HDM store data source.
createDeleteTransformation(Schema, SchemaObject, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a DELETE transformation.
createDeleteTransformation(Schema, SchemaObject, String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a DELETE transformation.
createdObject - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
createExecutionStatement(int, CompositeTransformation) - Method in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
createExecutionStatement(int, CompositeTransformation) - Method in class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
createExecutionStatement(int, CompositeTransformation) - Method in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
createExecutionStatement(int, CompositeTransformation) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
createExecutionStatement(int, CompositeTransformation) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
createExecutionStatement(int, CompositeTransformation) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
createExecutionStatement(int, CompositeTransformation) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
createExecutionStatement(int, CompositeTransformation) - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
createExecutionStatement(int, CompositeTransformation) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
createExtendTransformation(Schema, Construct, Object[], String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an EXTEND transformation.
createExtendTransformation(Schema, Construct, Object[], String, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an EXTEND transformation.
createFields() - Method in class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
createFields() - Method in class uk.ac.ic.doc.automed.editor.GUITool
 
createFields() - Method in class uk.ac.ic.doc.automed.editor.ReportException
 
createFields() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
createFirstArgument(int, int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Creates a new sequence of arguments and adds a new argument to the sequence
createFirstArgument(int, String) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Creates a new sequence of arguments and adds a new argument to the sequence
createFirstArgument(int, String, Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Creates a new sequence of arguments and adds a new argument to the sequence
createFollowingSchemaName() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
createFollowingSchemaName(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Generate a name of a schema that "appears" to be following the name used for this Schema, and which has not already been used as a Schema name
createHdmStore(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Create a logical HDM store for the given schema.
createIdentTransformation(Schema, Schema, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates an IDENT transformation.
createIdentTransformations(Schema, Schema, String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Deprecated. Use #createIdentTransformations() instead.
createIntSchemaName(String, boolean, boolean) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a name for an intentional schema based on a given schema.
createLine() - Static method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
CreateListStatement - class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement.
 
CreateListStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
createMethod(String, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Adds a new method to the SMR.
createMethodArgument(int, int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Adds a new argument to the method's arguments.
createModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Define a relational modelling language for the SQL standard, together with the JDBC protocol for accessing SQL compliant databases.
createModel(String) - Static method in class uk.ac.ic.doc.automed.MDR
Creates a new data modelling language which can then have constructs added.
createModel(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
Creates a new model with the given name.
createPathway(Schema[]) - Static method in class uk.ac.ic.doc.automed.reps.Pathway
 
createPattern(String, String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Adds a new pattern to the SSMDR.
createPattern(String, String) - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
createPatternSobjAssociation(int, int, int, int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Add the association between ssdpattern and schema object to the SSMDR.
createPrimitiveTransformation(int, String[], String[], Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Creates a primitive transformation and appends it in the STR.
createProtocol(String) - Static method in class uk.ac.ic.doc.automed.STR
Add the given protocol to the STR.
createProtocol(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Creates a new protocol.
createRenameTransformation(Schema, SchemaObject, Object[]) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a RENAME transformation.
createRenameTransformation(Schema, SchemaObject, Object[], String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a RENAME transformation.
createReturnArgument(TemplateArgumentSequence) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
createReturnedArgumentsDefinition(TemplateArgumentSequence) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Defines the values of the arguments that store returned values after the transformation's invocation.
createRhombus() - Static method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
createSchema(String, boolean) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Creates a new schema.
createSchema(String, boolean, boolean, boolean, int) - Static method in class uk.ac.ic.doc.automed.STR
Adds a new schema to the STR.
createSchema(String, boolean, boolean, boolean, Schema) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Creates a new schema.
createSchemaObject(Construct, Object[]) - Method in class uk.ac.ic.doc.automed.reps.Schema
Creates a schema object.
createSchemaObject(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Adds a new schema object to the STR.
createSchemaObject(Schema, Construct, Object[]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
All schemaobjects belong to schemas Creates a new schema object.
createSchemaObjectFromDB(int, Schema) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Instantiates a SchemaObject whose record already exists in the STR.
createScheme(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Adds a scheme to the STR.
createSSDFormat(String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Adds a new ssdformat to the SSMDR.
createSSDFormat(String, Schema) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
Create a SSDFormat
createSSDPattern(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Adds a ssdpattern to the SSMDR.
createSSDPattern(Pattern) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
createStatement(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Adds a new statement to the TTSR.
createStatementDefinition(int, int, String, String, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Adds a new argument definition to the statement's definitions of arguments.
createStatementExecution(int, Statement, TemplateArgumentSequence) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Defines the statement to be invoked at a particular program counter.
createTransformation(String, int, int, int, int, String, String) - Static method in class uk.ac.ic.doc.automed.STR
Adds a transformation to the STR between two existing schemas, which must not already have a transformation between them.
currentArgumentPosition - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
currentForeachVariables - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
currentKey - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
currentlyDisplayedSchema - Variable in class uk.ac.ic.doc.automed.templates.gui.SchemaFrame
 
currentScopeStack - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
cx - Variable in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
cy - Variable in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 

D

d - Variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
DATA_SIZE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model the size in bytes of a column as part of a column in any Schema the factory generates
data_source - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
DATA_TYPE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model the datatype of a column as part of a column in any Schema the factory generates
data() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns the Object contained in the Cell
DataSourceException - exception uk.ac.ic.doc.automed.wrappers.DataSourceException.
Generated when some problem occurs when accessing a data source, such as the wrong password being supplied.
DataSourceException(String) - Constructor for class uk.ac.ic.doc.automed.wrappers.DataSourceException
Creates an DataSourceException when there has been no Exception that caused the error to discovered.
DataSourceException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.wrappers.DataSourceException
Creates an DataSourceException when it is acting as a wrapper for other Exceptions.
DataSourceRepository - class uk.ac.ic.doc.automed.DataSourceRepository.
Deprecated. Old name for DSR
DataSourceRepository() - Constructor for class uk.ac.ic.doc.automed.DataSourceRepository
Deprecated.  
DataSourceRepositoryException - exception uk.ac.ic.doc.automed.DataSourceRepositoryException.
Deprecated. Old name for DSRException.
DataSourceRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.DataSourceRepositoryException
Deprecated.  
dataType() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the dataType
dataType() - Method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
get the dataType
DataTypeModule - class uk.ac.ic.doc.automed.matching.modules.DataTypeModule.
 
DataTypeModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.DataTypeModule
 
DATE_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
dateValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 
DAY - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one day
debug - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
debug - Variable in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 
Debug - class uk.ac.bbk.dcs.automed.hdmstore.Debug.
The Debug class allows debugging messages to be sent from a calling application.
DEBUG_SECTION_GOBBLE_PATH - Static variable in class uk.ac.ic.doc.automed.STR
 
DEBUG_SECTION_GUI - Static variable in class uk.ac.ic.doc.automed.STR
 
Debug() - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Debug
Standard constructor, default message level, no logging, print to output.
Debug(int) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Debug
Constructor with message level parameter , no logging, print to output.
Debug(int, boolean, boolean) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Debug
Constructor with message level, logging and print to output all parameters.
Debug(int, boolean, boolean, String) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Debug
Constructor with message level, logging, print to output and log file name all parameters.
debugPrintStackTrace(Throwable, int) - Static method in class uk.ac.ic.doc.automed.STR
Print an throwable's stack trace, but only at a certain debug level
debugString() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
A String representation of this object useful for debugging code
debugString() - Method in class uk.ac.ic.doc.automed.reps.Schema
A String representation of this object useful for debugging code
debugString() - Method in class uk.ac.ic.doc.automed.reps.Transformation
A String representation of this object useful for debugging code
DefaultDrawConstraintArc - class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintArc.
 
DefaultDrawConstraintArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintArc
 
DefaultDrawConstraintVertex - class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex.
 
DefaultDrawConstraintVertex(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex
 
DefaultDrawConstraintVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex
 
DefaultDrawLinkArc - class uk.ac.ic.doc.automed.editor.DefaultDrawLinkArc.
 
DefaultDrawLinkArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawLinkArc
 
DefaultDrawLinkNodalArc - class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalArc.
 
DefaultDrawLinkNodalArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalArc
 
DefaultDrawLinkNodalVertex - class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex.
 
DefaultDrawLinkNodalVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
DefaultDrawLinkVertex - class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex.
 
DefaultDrawLinkVertex(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
 
DefaultDrawNodalVertex - class uk.ac.ic.doc.automed.editor.DefaultDrawNodalVertex.
 
DefaultDrawNodalVertex(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.DefaultDrawNodalVertex
 
defaultModel - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
defaultModel() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
 
defaultModel() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
Return the AutoMed Model that the template transformation will generate or delete SchemaObjects in
DefaultTemplate - class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate.
The DefaultTemplate class enables the definition of template transformations at run-time.
DefaultTemplate() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
Instantiates a template transformation.
DefaultTemplate(Model, String, String) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
Instantiates a template transformation.
DEFINE_CONSTRAINTS(Object[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_CONSTRAINTS(Object[], String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_CONSTRAINTS(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_CONSTRAINTS(String, String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_FUNCTION(Object[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_FUNCTION(Object[], String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_FUNCTION(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_FUNCTION(String, String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_NAME(Object[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_NAME(Object[], String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_NAME(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_NAME(String, String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_STRING_STATEMENT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Statement to defined dynamic strings, used for functions, constraints definitions and more
DEFINE_STRING(Object[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_STRING(Object[], String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_STRING(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_STRING(String, String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_STRING(TemplateCompilerSimulator.STRINGLIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINE_STRING(TemplateCompilerSimulator.STRINGLIST, String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DefineStringStatement - class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement.
 
DefineStringStatement(int) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
defineTemplate() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
 
defineTemplate() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINING_FOREACH_VARIABLES - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINING_IF_VALRIABLES - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DEFINING_INPUT_VARIABLES - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DegreeCombinator - class uk.ac.ic.doc.automed.matching.DegreeCombinator.
 
DegreeCombinator(SimilarSchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.DegreeCombinator
 
delete - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
DELETE - Static variable in class uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort of deletion from the repository.
DELETE_ICON - Static variable in class uk.ac.ic.doc.automed.templates.gui.Accessories
 
DELETE() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
DELETE(TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
DELETE(TemplateCompilerSimulator.CONSTRAINTS, TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
DELETE(TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
DELETE(TemplateCompilerSimulator.FUNCTION, TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
DELETE(TemplateCompilerSimulator.OBJECT) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DELETE(TemplateCompilerSimulator.OBJECT, TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DELETE(TemplateCompilerSimulator.OBJECT, TemplateCompilerSimulator.CONSTRAINTS, TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DELETE(TemplateCompilerSimulator.OBJECT, TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
DELETE(TemplateCompilerSimulator.OBJECT, TemplateCompilerSimulator.FUNCTION, TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
deleteButtonClicked(InputItem) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
deleted() - Method in class uk.ac.ic.doc.automed.reps.Network
Return true when the Network class is finished with, after all Schemas have been deleted from it
deleteEdge(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Check the node type is valid & and instance of the node with this value exists.
deleteIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
deleteIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Take the query and attempt to insert each of the values in the list into the database.
deleteNode(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Check the node type is valid & and instance of the node with this value exists.
DeleteStatement - class uk.ac.ic.doc.automed.templates.wrapper.DeleteStatement.
 
DeleteStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.DeleteStatement
 
dependent - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
describeTransformations(Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns a String describing the transformations executed in the Vector given as a parameter
description - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
descriptionPane - Variable in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
descriptions - Variable in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
descriptionScroller - Variable in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
dialogueFinished(CompositeTransformationRecord) - Method in interface uk.ac.ic.doc.automed.templates.gui.DialogueLauncher
 
DialogueLauncher - interface uk.ac.ic.doc.automed.templates.gui.DialogueLauncher.
 
DialogueManager - interface uk.ac.ic.doc.automed.templates.gui.DialogueManager.
 
Difference - class uk.ac.bbk.dcs.automed.qproc.functions.Difference.
 
Difference() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Difference
 
differenceByName(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an SchemaObject array containing the difference by name between this schema (s1) and the schema passed as a parameter (s2).
DirectedGraph - class uk.ac.bbk.dcs.automed.graph.DirectedGraph.
Class that abstracts a directed unlabelled graph.
DirectedGraph() - Constructor for class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
DirectedGraphNode - class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode.
Class that abstracts a node in a directed unlabelled graph.
DirectedGraphNode(String) - Constructor for class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
disableAll() - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
disableAll() - Method in interface uk.ac.ic.doc.automed.templates.gui.InteractiveSchemaDisplay
 
discoverRelationships() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
Disjointness - class uk.ac.ic.doc.automed.matching.relationships.Disjointness.
 
disjoints - Variable in class uk.ac.ic.doc.automed.matching.Integrator
 
Disjunction - class uk.ac.bbk.dcs.automed.qproc.functions.Disjunction.
 
Disjunction() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Disjunction
 
dispatchCommand(String) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
dispatchCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
Invokes the method registered for the command args[0] with #addCommand(String, Class).
display() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
return the node value using the HDM notation
display(LinkedList) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
Pretty print an edge
displayCurrentInputForm() - Method in class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
displayReferenceLists() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
Divide - class uk.ac.bbk.dcs.automed.qproc.functions.Divide.
 
Divide() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Divide
 
divide(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the division of two AutoMedFloats.
divide(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the division of two AutoMedIntegers.
divide(BidirectionalDegree) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
do_action(int, lr_parser, Stack, int) - Method in class uk.ac.bbk.dcs.automed.qproc.EnvParser
Invoke a user supplied parse action.
do_action(int, lr_parser, Stack, int) - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Invoke a user supplied parse action.
DO() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
doCreateCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doCreatedbCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
Reads the property CreateDB property for the data source and executes the value as an update on the databse connection
doDefaultCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doDisplayCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doDropdbCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doesReference() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
doExitCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
doGetCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doGetModelsCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetNetworkCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetNetworkNamesCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetNetworksCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doGetSchemaNetworkCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doHelpCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doHelpCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
doIsCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doListSchemaCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
domDriver - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
DOMMaterialiser - class uk.ac.bbk.dcs.automed.xml.DOMMaterialiser.
TODO: Informed repository that global schema is an external data source, TODO: should I do something else (inform location of data source)? TODO: investigate what happens to text in mixed elements
DOMMaterialiser(DOMWrapper, String, String, String[], boolean) - Constructor for class uk.ac.bbk.dcs.automed.xml.DOMMaterialiser
 
DOMWrapper - class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper.
A lower level wrapper that conforms to the XMLWrapper class.
DOMWrapper(AccessMethod, String) - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
DOMWrapperFactory - class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapperFactory.
A lower level wrapper factory for accessing XML files using DOM.
DOMWrapperFactory() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapperFactory
 
doPopulatedbCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doPrintCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doPrintNetworkCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.Editor
 
doQuitCommand(String[]) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
doReloadCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doRemoveCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
doSetCommand(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
 
Dot - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
DOUBLE_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Return the number of milliseconds since 1970 as a double
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedString
 
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return the arity (size) of the tuple as a double.
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the value of this AutoMedFloat as an double
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the value of this AutoMedInteger as a double
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Return the double representation of this AutoMedType.
doubleValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Return a double representation of this AutoMedBoolean, where true is 1.0 and false 0.0
draw() - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
draw() - Method in class uk.ac.ic.doc.automed.gui.Line
 
draw() - Method in class uk.ac.ic.doc.automed.gui.Box
 
draw() - Method in class uk.ac.ic.doc.automed.gui.Arc
 
Drawable - interface uk.ac.ic.doc.automed.editor.Drawable.
 
DrawableArc - interface uk.ac.ic.doc.automed.editor.DrawableArc.
 
DrawableVertex - interface uk.ac.ic.doc.automed.editor.DrawableVertex.
 
DrawArc - class uk.ac.ic.doc.automed.editor.DrawArc.
 
DrawArc(EditorPanel, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DrawArc
Pass in the array of objects that this connects together.
DrawArc(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DrawArc
Pass in the array of objects that this connects together.
drawDiamond(Graphics2D, int, int, int, int) - Static method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
 
DrawingObject - class uk.ac.ic.doc.automed.templates.gui.DrawingObject.
 
DrawingObject(int) - Constructor for class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
drawMap(String[][]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
drawMap(String[][], boolean) - Static method in class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
DrawVertex - class uk.ac.ic.doc.automed.editor.DrawVertex.
 
DrawVertex(EditorPanel, Positionable) - Constructor for class uk.ac.ic.doc.automed.editor.DrawVertex
 
DrawVertex(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.DrawVertex
 
driver - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
dropSequence() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Older versions of Postgres do not automatically drop sequences created for primary keys etc when the table is dropped - this loops through dropping the sequences explicitly.
DSR - class uk.ac.ic.doc.automed.DSR.
Reads data source definitions from a configuration file and provides methods to get a Connection for a data souce.
DSRException - exception uk.ac.ic.doc.automed.DSRException.
The class of exceptions generated by DSR.
DSRException(String) - Constructor for class uk.ac.ic.doc.automed.DSRException
 
duplicateDOM(Document) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Method that creates and returns a new DOM representation of the input one.
duplicateDOM(String, boolean) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
 
duplicateTransformation(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Creates a duplicate of the transformation.

E

Edge - class uk.ac.bbk.dcs.automed.hdmstore.Edge.
A Edge represents an HDM edge, which can be of any length, each element (or Span) can be a node or an edge and edges can be named (optionally).
EDGE_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
EDGE_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
edge() - Method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
get the edge
Edge(String, String[]) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.Edge
Construct a representation of an edge from a string representing its type and an array of spans
edgeAdded(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
edgeAdded(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
EdgeElement - class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement.
An edge element represents a single element of an edge.
edgeExists(Span) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Test to see if an edge exists has been passed a Span structure - split this out into type and and value and return the result.
edgeExists(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Does and edge with this type and value exist in the HDM store?
edgeInstanceExists(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Check to see if an instance of this edge exists in the HDM store
edgeNameIsUnique(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Edge names dont have to be unique - the combination of edge name and types is unique i.e.
edgeOrNode() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the edgeOrNode indicator
edgeRemoved(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
edgeRemoved(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
edgeSpan - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 
edgeTypeExists(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given an edge type e.g.
edgeTypeForName(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Assuming edge name is unique (which need to be checked before calling) return its edge type e.g.
edgeValueAsString() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
Get the edge values as a string
Editor - class uk.ac.ic.doc.automed.editor.Editor.
 
Editor(String[]) - Constructor for class uk.ac.ic.doc.automed.editor.Editor
 
EditorException - exception uk.ac.ic.doc.automed.editor.EditorException.
 
EditorException(String) - Constructor for class uk.ac.ic.doc.automed.editor.EditorException
 
EditorPanel - class uk.ac.ic.doc.automed.editor.EditorPanel.
 
EditorPanel(Gui.EditorFrame) - Constructor for class uk.ac.ic.doc.automed.editor.EditorPanel
 
EditorPanel(Map, Gui.EditorFrame) - Constructor for class uk.ac.ic.doc.automed.editor.EditorPanel
 
element - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
ELEMENT_AT(int, Construct) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.LIST
 
ELEMENT_AT(int, int) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.LIST
 
elementArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
elementAttributeQuery(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
elementAttributeQuery(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
elementAttributeQuery(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
elementElementQuery(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
elementElementQuery(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
elementElementQuery(String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
elementElementQuery(String, String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
elementElementQuery(String, String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
Nodes are compared based on elementName:count, not their whole UID
elementElementQuery(String, String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
Nodes are compared based on elementName:count, not their whole UID
ElementNameModule - class uk.ac.ic.doc.automed.matching.modules.ElementNameModule.
 
ElementNameModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.ElementNameModule
 
elementOrAttribute - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
elementOrPCData - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
elementPCDataQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
elementPCDataQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
elementPCDataQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
elementPCDataQuery(String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
elementPCDataQuery(String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
elementPCDataQuery(String, int) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
elementQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
elementQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
elementQuery(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
elementType() - Method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
get the elementType;
ElementVectorRepresentation - class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation.
 
ElementVectorRepresentation(SchemaElement, double[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation
 
emptyQuery() - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
Returns the ASG representation of the empty query.
enabled - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
END() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
endDocument() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
endElement(String, String, String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
ENDFOREACH() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
Environment - class uk.ac.bbk.dcs.automed.qproc.Environment.
 
Environment() - Constructor for class uk.ac.bbk.dcs.automed.qproc.Environment
 
Environment(File) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Environment
 
Environment(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Environment
 
EnvLexer - class uk.ac.bbk.dcs.automed.qproc.EnvLexer.
 
EnvLexer(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.EnvLexer
 
EnvLexer(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.EnvLexer
 
EnvParser - class uk.ac.bbk.dcs.automed.qproc.EnvParser.
CUP v0.10j generated parser.
EnvParser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.EnvParser
Default constructor.
EnvParser(Scanner) - Constructor for class uk.ac.bbk.dcs.automed.qproc.EnvParser
Constructor which sets the default scanner.
EnvSym - class uk.ac.bbk.dcs.automed.qproc.EnvSym.
CUP generated class containing symbol constants.
EnvSym() - Constructor for class uk.ac.bbk.dcs.automed.qproc.EnvSym
 
EOF - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
EOF - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
EOF - Static variable in class uk.ac.bbk.dcs.automed.qproc.EnvSym
 
EOF - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
EOF_sym() - Method in class uk.ac.bbk.dcs.automed.qproc.EnvParser
EOF Symbol index.
EOF_sym() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
EOF Symbol index.
EOL - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
ep - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
ep - Variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
Equal - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
EQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
SQL equality predicate for use within WHERE expressions
Equals - class uk.ac.bbk.dcs.automed.qproc.functions.Equals.
 
Equals() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Equals
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedString
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Test two AutoMedTypes for equality, performing conversions as appropriate.
equals(AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
 
equals(BidirectionalDegree) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
equals(Object) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
equals(Object) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
equals(Object) - Method in class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.Instance
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
equals(Object) - Method in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
Equivalence - class uk.ac.ic.doc.automed.matching.relationships.Equivalence.
 
equivalents - Variable in class uk.ac.ic.doc.automed.matching.Integrator
 
error - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
error - Static variable in class uk.ac.bbk.dcs.automed.qproc.EnvSym
 
error - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
ERROR - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.Debug
 
error_sym() - Method in class uk.ac.bbk.dcs.automed.qproc.EnvParser
error Symbol index.
error_sym() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
error Symbol index.
error(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Debug
Write an error level message
escapeSQLString(String) - Static method in class uk.ac.ic.doc.automed.STR
Take a string, and escape its characters such the \ character will be stored in SQL correctly.
escapeString(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
Take a string, and escape its characters such the \ character will print correctly.
evaluate(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.Evaluator
Evaluates g to normal form.
evaluate(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.Evaluator
Evaluates the graph of which root is the root to normal form.
evaluateSize() - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
evaluateXPath(Document, String, int) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
 
Evaluator - class uk.ac.bbk.dcs.automed.qproc.Evaluator.
The class that coordinates the evaluation of IQL queries.
Evaluator(FunctionTable) - Constructor for class uk.ac.bbk.dcs.automed.qproc.Evaluator
Constructs an Evaluator object that will use the ft for the evaluation of built-in functions.
exactlyTwo(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
EXECUTE_ICON - Static variable in class uk.ac.ic.doc.automed.templates.gui.Accessories
 
executeCreateListStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Executes a CREATE_LIST statement.
executeDefineStringStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Executes a DEFINE_STRING statement.
executedStatementNR - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
executedStatements - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
executedStatementsArguments - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
executeForEachStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Executes a foreach statement.
executeIndexListStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
executeInvocationStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Executes a transformation_invocation statement.
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Execute an IQL query on the datasource.
executeIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
executeIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
executeIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Takes ASG query and passes it to a LowLevelWrapperHdm for processing.
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Execute a query in the datasource's native query language, and obtain a result in an AutoMedResult class
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
executeLocalQuery(AutoMedQuery) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
This is a stub required as the AutoMedWrapper requires it
executeNewObjectStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Executes a new_object statement.
executePrimitiveTransformationStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Executes a primitive_transformation statement.
executeQuery(String) - Static method in class uk.ac.ic.doc.automed.MDR
Execute a SQL query on the repository, and return the result in a Vector
executeQuery(String) - Static method in class uk.ac.ic.doc.automed.STR
Execute a SQL query on the repository, and return the result in a Vector
executeSchemeListStatement(int, int, int, String[], HashMap, int, String[], String[], Vector, Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
executeSQLQuery(SQLQuery) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
Execute a query on the data source, returning the result in the standard format for instances of SQL queries.
executeStatement(String, Connection, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatement(String, Connection, OutputStream, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatement(String, Connection, Writer) - Static method in class uk.ac.ic.doc.automed.Util
Executes the sql statement on the JDBC Concection and returns either a ResultSet, an Integer representing the update count or an SQLException if thrown when executing the command.
executeStatement(String, Connection, Writer, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatement(String, String, boolean) - Static method in class uk.ac.ic.doc.automed.DSR
 
executeStatement(String, String, boolean, Set) - Static method in class uk.ac.ic.doc.automed.DSR
 
executeStatements(String, String, boolean) - Static method in class uk.ac.ic.doc.automed.DSR
 
executeStatements(String, String, boolean, Set) - Static method in class uk.ac.ic.doc.automed.DSR
 
executeStatements(String, String, Connection, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatements(String, String, Connection, OutputStream, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeStatements(String, String, Connection, Writer) - Static method in class uk.ac.ic.doc.automed.Util
Calls {link #executeStatement(String, Connection, Writer)} with each each statement in sql seperated by del.
executeStatements(String, String, Connection, Writer, Set) - Static method in class uk.ac.ic.doc.automed.Util
 
executeTransformation() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
executeTransformation(int, InteractiveSchemaDisplay, Frame) - Static method in class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
executeTransformation(int, int, Frame) - Static method in class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
executeTransformation(int, int, InteractiveSchemaDisplay, Frame) - Static method in class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
executeTransformation(int, int, String[], HashMap, int, String[], String[], Vector, Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Main method which executes a composite transformation.
executeUpdate(String) - Static method in class uk.ac.ic.doc.automed.MDR
Execute a SQL update on the repository.
executeUpdate(String) - Static method in class uk.ac.ic.doc.automed.STR
Execute a SQL update on the repository.
executeXMLQuery(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
Given an IQL query, this method queries the XML file using DOM, then returns the answer in ASG format.
executeYattaQuery(YattaQuery) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
exists(int) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
exists(int) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
Returns true if the format for the specified schema identifier exists
exists(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns true is the named schema exists
exists(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Determine if a given named protocol exists in the repository
exists(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
exists(String) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
Returns true if the format for the specified ssdformat exists
exists(String) - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
existsIn(SchemaElement, SchemaElementPair[], int) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
existsIn(String, SchemaObject[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
exitCommandLine() - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
exitCommandLine(int) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
exitHelp - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
exitSyntax - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
exportConstructs(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Model
 
exportConstructs(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Model
 
exportSchemaObjects(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
exportSchemaObjects(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
exportSchemes(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
exportSchemes(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
extend - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
EXTEND(Construct, Object[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
EXTEND(Construct, Object[], TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
EXTEND(Construct, Object[], TemplateCompilerSimulator.CONSTRAINTS, TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
EXTEND(Construct, Object[], TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
EXTEND(Construct, Object[], TemplateCompilerSimulator.FUNCTION, TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
extendEnvironment(File) - Method in class uk.ac.bbk.dcs.automed.qproc.Environment
 
extendEnvironment(String) - Method in class uk.ac.bbk.dcs.automed.qproc.Environment
 
ExtendStatement - class uk.ac.ic.doc.automed.templates.wrapper.ExtendStatement.
 
ExtendStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.ExtendStatement
 
extendToMatch(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Create a new Schema which contains the same set of constructs as the current schema, plus all those constructs of another schema, which are defined via extend operators.
extendToMatch(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.matching.Integrator
 
EXTGENSCHEME_STATEMENT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Statement to extend an ER generalization's scheme

F

factoryInUse - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
features - Static variable in class uk.ac.ic.doc.automed.matching.modules.StatisticsModule
 
FIELD - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
FIELD_TYPE_AUTOMEDQUERY - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A field that can hold a AutoMedQuery
FIELD_TYPE_INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A field that can hold an Integer constant
FIELD_TYPE_INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
A field that can hold an Integer constant
FIELD_TYPE_ONE_OR_MORE - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Used when the previous field type may be repeated any number of times.
FIELD_TYPE_ONE_OR_MORE - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
Used when the previous field type may be repeated any number of times.
FIELD_TYPE_SCHEMEQUERY - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
A field that can hold a SchemeQuery
FIELD_TYPE_STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A field that can hold a String constant
FIELD_TYPE_STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
A field that can hold a String constant
fileCreate(String, String, String) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Creates a new file named "fileName" in path "filePath", with only the root, named "rootName", and returns its DOM representation.
fillDiamond(Graphics2D, int, int, int, int) - Static method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
 
Filter - class uk.ac.ic.doc.automed.matching.Filter.
 
Filter(SchemaElement[], SchemaElement[]) - Constructor for class uk.ac.ic.doc.automed.matching.Filter
 
Filter(SchemaElementPair[]) - Constructor for class uk.ac.ic.doc.automed.matching.Filter
 
finalize() - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
findAtomicRelationships(SchemaObject[], SchemaObject[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
findAtomicRelationships(SchemaObject, SchemaObject[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
findAttachedDataSources() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Schema's that are connected to this schema by some transformation pathway and are data sources (including this schema itself if it is a data source).
findAttachedExtDBs() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Schema's that are connected to this schema by some transformation pathway and have extensional data (including this schema itself if it has extensional data).
findAttachedExtSchemas() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Schema's that are connected to this schema by some transformation pathway and are extensional schemas (including this schema itself if it is an extensional schema).
findAutoMedFile(String) - Static method in class uk.ac.ic.doc.automed.Util
 
findFile(String) - Static method in class uk.ac.ic.doc.automed.Util
Returns a URL for the given name using several methods to make it useful for locating configuration files, resources etc.
findmax(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Max
 
findmin(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Min
 
findPath(Node, Node, LinkedList, LinkedList) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
 
findRelated(SchemaObject[], SchemaObject[], SemanticRelationship, boolean) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
findShortestPath(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of schemas such that: There is a transformation between each pair of adjacent schamas.
findShortestPathway(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.reps.Pathway
Find the shortest path containing the fewest number of steps between two schemas.
findShortestPathway(String, String) - Static method in class uk.ac.ic.doc.automed.reps.Pathway
 
FINISHED - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
First - class uk.ac.bbk.dcs.automed.qproc.functions.First.
 
First() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.First
 
firstCharKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
Flatmap - class uk.ac.bbk.dcs.automed.qproc.functions.Flatmap.
 
Flatmap() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Flatmap
 
flattenSchemes(Object[]) - Static method in class uk.ac.ic.doc.automed.STR
Converts an Object array representation of a schema object's scheme into a String representation.
FLexer - class uk.ac.bbk.dcs.automed.qproc.FLexer.
 
FLexer(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.FLexer
 
FLexer(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.FLexer
 
FLOAT - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
FLOAT - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a floating point atomic type
FLOAT_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
floatValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the value of this AutoMedFloat as an float
fm - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
fm - Static variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
focusItem(InputItem) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
FoldFunction - class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction.
 
FoldFunction(String, int, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 
FoldFunction(String, int, String, String, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 
FoldFunctionTable - class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunctionTable.
 
FoldFunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunctionTable
 
Foldl - class uk.ac.bbk.dcs.automed.qproc.functions.Foldl.
 
Foldl() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Foldl
 
FoldNilRule - class uk.ac.bbk.dcs.automed.qproc.optimise.FoldNilRule.
 
FoldNilRule(FoldFunctionTable) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.FoldNilRule
 
Foldr - class uk.ac.bbk.dcs.automed.qproc.functions.Foldr.
 
Foldr() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Foldr
 
FOREACH_STATEMENT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Statement to iterate on lists
FOREACH() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
foreachArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
foreachBlock - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
foreachStack - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
ForeachStatement - class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement.
 
ForeachStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
FOREIGN_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model foreign keys in any Schema the factory generates
Forest - class uk.ac.bbk.dcs.automed.graph.Forest.
Class that abstracts the structure of a forest.
Forest() - Constructor for class uk.ac.bbk.dcs.automed.graph.Forest
 
formattedString() - Method in class uk.ac.bbk.dcs.automed.qproc.ASG
Given that the ASG represents a list the string returned has each element separated by carriage returns for more legible output.
formattedString(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
If g is an ASG list the string returned has each element separated by carriage returns for more legible output.
formattedString(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
If n is the root of an ASG that represents a list, the string returned has each element separated by carriage returns for more legible output.
FragmentProcessor - class uk.ac.bbk.dcs.automed.qproc.FragmentProcessor.
The purpose of this class is to replace all schemes with wrapper objects.
FragmentProcessor() - Constructor for class uk.ac.bbk.dcs.automed.qproc.FragmentProcessor
 
FROM - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
The first field can contain a SQLQuery WHERE
fromASG(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
Returns the text IQL of g.
fromASG(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
returns the text IQL of the abstract syntax graph of which n is the root.
fromASGList(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
If g represents a list this returns an ArrayList of its Cells.
fromASGList(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
If n is the root of an ASG that represents a list, this returns an ArrayList of its Cells.
fromASGTuple(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
If g represents a tuple this returns an ArrayList of its Cells.
fromASGTuple(Cell) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
If n is the root of an ASG that represents a tuple, this returns an ArrayList of its Cells.
fromObjectARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
fromObjectARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
fromObjectARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
fromSchemaARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
FSym - class uk.ac.bbk.dcs.automed.qproc.FSym.
CUP generated class containing symbol constants.
FSym() - Constructor for class uk.ac.bbk.dcs.automed.qproc.FSym
 
function - Static variable in class uk.ac.bbk.dcs.automed.qproc.Cell
 
Function - Static variable in class uk.ac.bbk.dcs.automed.qproc.EnvSym
 
FUNCTION - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
functionARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
functionARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
functionARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
FunctionTable - class uk.ac.bbk.dcs.automed.qproc.FunctionTable.
Class containing a HashMap that keeps the function names.
FunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.qproc.FunctionTable
Constructs a FunctionTable object representing an empty table.
FunctionTable(BuiltInFunction[], String[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.FunctionTable
Constructs a FunctionTable object.

G

generateId - class uk.ac.ic.doc.automed.wrappers.ssdfunctions.generateId.
 
generateId() - Constructor for class uk.ac.ic.doc.automed.wrappers.ssdfunctions.generateId
 
genericRootName - Static variable in class uk.ac.bbk.dcs.automed.graph.Forest
 
get(int) - Method in class uk.ac.ic.doc.automed.reps.Pathway
Returns the Schema at the given index of the pathway.
get(int) - Method in class uk.ac.ic.doc.automed.matching.modules.Vectors
 
getAbsoluteDegrees(ArrayList, ArrayList) - Static method in class uk.ac.ic.doc.automed.matching.modules.ClustererClassifier
 
getAccessMethod() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Returns the AccessMethod associated with this wrapper, which holds the details of the datasource being wrapped.
getAccessMethod(int) - Static method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the AccessMethod held with the given identifier in in the STR.
getAccessMethodAWFFeatures(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the feature settings of the specified access method.
getAccessMethodBySID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns all the access method identifiers (AMID) that point to the access methods for the specified schema.
getAccessMethodDBDriver(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the database driver of the specified access method.
getAccessMethodPassword(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the password of the specified access method.
getAccessMethodPID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the protocol identifier (PID) of the specified access method.
getAccessMethodProperty(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Access Method Property
getAccessMethods() - Method in class uk.ac.ic.doc.automed.reps.Schema
Find the AccessMethods that may be used to access the physical database system that holds this Schema.
getAccessMethodSID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) to which the specified access method connects.
getAccessMethodURL(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the URL of the specified access method.
getAccessMethodUsername(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the username of the specified access method.
getAccessMethodWrapper(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the feature settings of the specified access method.
getAction() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getActionFrom(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the action of the transformation.
getActionNameFrom(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getActionNameTo(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getActionString() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getActionTo(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the action of the transformation.
getAdjacent() - Method in class uk.ac.ic.doc.automed.reps.Node
Returns all nodes that are adjacent to this node - that is, nodes for which a transformation is defined between its schema and this node's schema.
getAllCombinations(Object[], Object[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
getAllCombinations(Object[], Object[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
getAllCompositeTransformations() - Static method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns an array of all CompositeTransformation objects.
getAllNodes() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getAllPairs() - Method in class uk.ac.ic.doc.automed.matching.Filter
 
getAllPatternNames() - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the vector of patterns'name
getAllPatternNames() - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getAllPatterns(String) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
getAllProtocols() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of all the protocols found in the STR.
getAllReferencedSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns all the schema objects referenced in a transformation, including those referenced in its query.
The result of this method is the union of the results returned by the methods Transformation.getReferencedSchemaObjects() and Transformation.getReferencedSchemaObjectsInQuery().
getAllSchemaNames() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of all the schemas found in the STR.
getAllSchemeNames() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an Object array of schemes of all the schema objects that belong to the schema.
getAllSchemeNames(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNames(boolean, int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNames(boolean, int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNames(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns an Object array of all objects' schemes of a schema.
getAllSchemeNamesString() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the scheme representation (of type String) of the schemes of all the schema objects that belong to the schema.
getAllSchemeNamesString(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNamesString(boolean, int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNamesString(boolean, int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getAllSchemeNamesString(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the scheme representation (of type String) of all objects' schemes of a schema.
getAllTrans() - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
getAMID() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the access method identifier (AMID).
getAppearances() - Method in class uk.ac.ic.doc.automed.matching.Instance
 
getAppearances(String[], char) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getArcDrawable() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the name of the class implementing drawable that should be used to draw arc elements of this construct.
getArcs() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
getArgConstruct() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the Construct type of the ConstructScheme.
getArgument() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
getArgument() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM
 
getArgumentAt(int) - Method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Returns a particular TemplateArgument in this TemplateArgumentSequence.
getArgumentAt(int) - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
Returns a particular RuntimeArgument in this RuntimeArgumentSequence.
getArgumentDefinitionAt(int) - Method in class uk.ac.ic.doc.automed.templates.Statement
Returns a particular StatementArgumentDefinition in the Statements's argument definition list.
getArgumentDefinitionAt(int) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns a particular TransformationArgumentDefinition in the CompositeTransformations's argument definition list.
getArgumentDefinitions() - Method in class uk.ac.ic.doc.automed.templates.Statement
Returns an array of all the StatementArgumentDefinition objects of this Statement.
getArgumentDefinitions() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns an array of all the TransformationArgumentDefinition objects in this CompositeTransformation.
getArgumentDefinitions(boolean) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns an array of TransformationArgumentDefinition objects.
getArgumentDefinitionsForStatement(int) - Static method in class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
Returns all the StatementArgumentDefinition objects of the specified statement.
getArgumentDefinitionsForTransformation(int) - Static method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Returns all the TransformationArgumentDefinition objects of the specified transformation.
getArgumentDescription(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
getArgumentDescription(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
getArgumentDescription(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
getArgumentDescription(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
getArgumentDescription(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
getArgumentDescription(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
getArgumentDescription(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
getArgumentDescription(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
getArgumentDescription(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
getArguments() - Method in class uk.ac.ic.doc.automed.gui.ArgumentsDialog
Returns the values for the argument sequence.
getArguments() - Method in class uk.ac.ic.doc.automed.gui.ArgPane
Returns the arguments defined by the user in this ArgPane.
getArguments() - Method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Returns an array of all the TemplateArguments in this TemplateArgumentSequence.
getArguments() - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
Returns an array of all the RuntimeArguments in this RuntimeArgumentSequence.
getArgumentsArgIdList() - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of identifiers of all the sequences of arguments
getArgumentsArgIdList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a list of identifiers of all the sequences of arguments
getArgumentsArgIdRef(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular argument's arg_id_ref field
getArgumentsArgIdRefList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular's sequence of arguments list of arg_id_ref fields.
getArgumentsArgPosList(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a particular's sequence of arguments list of positions.
getArgumentsArgPosList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular's sequence of arguments list of positions.
getArgumentsArgPosRef(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular argument's arg_pos_ref field
getArgumentsArgPosRefList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular's sequence of arguments list of arg_pos_ref fields.
getArgumentSequence() - Method in class uk.ac.ic.doc.automed.templates.StatementExecution
Returns the TemplateArgumentSequence of this StatementExecution.
getArgumentSequence() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
getArgumentsForSequence(int) - Static method in class uk.ac.ic.doc.automed.templates.TemplateArgument
Returns all the TemplateArgument objects of the specified sequence of arguments.
getArgumentsForSequence(int) - Static method in class uk.ac.ic.doc.automed.templates.RuntimeArgument
Returns all RuntimeArgument objects of the specified sequence of arguments.
getArgumentsValue(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a particular argument's value field
getArgumentsValue(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular argument's value field
getArgumentsValueList(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a particular's sequence of arguments list of value fields.
getArgumentsValueList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular's sequence of arguments list of values.
getArgumentValues() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
getArity() - Method in interface uk.ac.bbk.dcs.automed.qproc.BuiltInFunction
Returns the arity of the function.
getArity() - Method in class uk.ac.ic.doc.automed.wrappers.ssdfunctions.generateId
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Flatmap
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Foldr
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.BagIntersect
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Monus
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Foldl
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Equals
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Comprehension
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Sort
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.LessEqual
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Minus
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.SortDistinct
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.And
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Not
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Member
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.GreaterEqual
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.SubBag
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.LoadListFromFile
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Count
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Less
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Group
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.CallToWrapper
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Plus
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Sum
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.If
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Multiply
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Id
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Append
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.SetUnion
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Single
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.First
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Let
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Or
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Greater
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Map
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.GroupCompute
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.NotEqual
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Min
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Second
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Difference
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Average
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Divide
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Max
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Disjunction
 
getArity() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 
getAtomicRelationship(SchemaElementPair) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
getAtomicRelationshipCombinations(SchemaObject[], SchemaObject[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
getAttribute(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return a particular attribute from a tuple (counting from one)
getAttributeType(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
getAttributeType(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Returns the type of an attribute in the tuple that the cursor currently points at.
getAutoMedFile(String) - Static method in class uk.ac.ic.doc.automed.Util
 
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Return the AutoMed oriented Model used to represent the Schema of the datasource.
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the AutoMed relational Model used to represent the Schema for the SQL datasource wrapper.
getAutoMedModel() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
Return the AutoMed oriented Model, which is the same as the source oriented Model for the semistructured datasource
getAutoMedModel() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
getAutoMedModel() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
getAutoMedModelName() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Find the name of the Model that will be used to represent an AutoMed oriented view of the data source.
getAutoMedQueryToken() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return the AutoMedQueryToken of this node; ie the type of object query node represents.
getAutoMedTuple() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Return the tuple which the cursor current points at.
getAutoMedTuple(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Move the cursor and get the tuple that is at the point
getAutoMedWrapper(AccessMethod) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Equivalent to calling newAutoMedWrapper(am,null)
getAutoMedWrapper(AccessMethod, String) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return the wrapper asspciated to a stored AccessMethod.
getAutoMedWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return the AutoMedWrapperFactory currently associated with this wrapper.
getAutoMedWrapperFactoryFeatures() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the feature settings as used with associated AutoMedWrapperFactory
getAverage(double[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getAverageAppearances(String[], char) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getBackgroundColor() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getBackgroundColor() - Method in class uk.ac.ic.doc.automed.reps.Construct
Return the default background colour to be used from drawing SchemaObjects of this Construct.
getBackgroundColor() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getBackgroundColor() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getBackgroundColor() - Method in class uk.ac.ic.doc.automed.reps.Model
Return the default background colour to be used from drawing SchemaObjects of this Model.
getBackgroundColor() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getBackwardDegree() - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
getBidirectionalDegrees() - Method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
getBidirectionalDegrees(Hashtable, Hashtable) - Static method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
getBidirectionalSimilarity(SchemaElementPair) - Method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
getBoundingBox() - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
getBoundingBox() - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
getBoundingBox() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getBoundingBox() - Method in class uk.ac.ic.doc.automed.gui.Box
 
getBoundingBox() - Method in class uk.ac.ic.doc.automed.gui.Arc
 
getBounds() - Method in interface uk.ac.ic.doc.automed.editor.DrawableVertex
Describe the rectangular area within the EditorPanel where this Drawable vertex is to be painted.
getBounds() - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
 
getBounds() - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
getBounds() - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex
 
getCause() - Method in class uk.ac.ic.doc.automed.RepositoryAccessException
 
getCause() - Method in class uk.ac.ic.doc.automed.reps.AutoRepException
 
getCause() - Method in class uk.ac.ic.doc.automed.gui.GUIException
 
getCause() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateDefinitionException
 
getCenter() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
getCentre() - Method in interface uk.ac.ic.doc.automed.editor.DrawableVertex
Describe where the centre of the Drawable visually appears to a viewer.
getCentre() - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
Describe where the centre of the Drawable visually appears to a viewer.
getCentre() - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
getCentreOffset() - Method in interface uk.ac.ic.doc.automed.editor.DrawableVertex
Describe where the centre of the Drawable visually appears to a viewer.
getCentreOffset() - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
Implements the Drawable
getCentreOffset() - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
getChildCount(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Counts the children of the given node.
getChildren() - Method in class uk.ac.ic.doc.automed.reps.Node
If the network this node belongs to is directed then returns all the adjacent nodes that are children of this node, otherwise its behaviour is defined by the type of network but the children will be a subset of adjacent.
getChildren() - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 
getCID() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the construct identifier (CID) of the construct.
getCID() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
getClassName() - Method in class uk.ac.ic.doc.automed.IntegrityException
Return the className of the object that the manipulation of caused this exception.
getClassName(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the class name of the method specified by meth_id
getClassNameList() - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the class names of all the methods found in the SMR
getCloseSchemeBracket() - Static method in class uk.ac.ic.doc.automed.STR
Return String used to close schemes
getCloseSchemeBracket() - Static method in class uk.ac.ic.doc.automed.reps.Schema
find what string is used to deliminate the closing of a scheme name, such as the ">>" in "<<person>>" or "<<person,name>>".
getClusters() - Method in class uk.ac.ic.doc.automed.matching.modules.Clusterer
 
getColumnDetailsSchemeLength() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the number of fields in a full source table scheme that are used to represent the structure and type of one column (ie its name, data type, size, null, ...)
getColumnNames(ResultSet) - Static method in class uk.ac.ic.doc.automed.Util
 
getColumns(SchemaObject, ArrayList) - Method in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
getColumnsOfTable(Schema, SchemaObject) - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
getColumnTypes(ResultSet) - Static method in class uk.ac.ic.doc.automed.Util
 
getCombinations(Object[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
getCombinationsOverMultipleArrays(ArrayList[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
getCommandClass() - Static method in class uk.ac.ic.doc.automed.DSR
 
getCommonRelationship(SchemaElementPairRelationship[]) - Static method in class uk.ac.ic.doc.automed.matching.Integrator
 
getCommonSchema(Transformation) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getCompatibles(double) - Method in class uk.ac.ic.doc.automed.matching.Filter
 
getCompositeTransformation(int) - Static method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns a reference to a CompositeTransformation.
getCompositeTransformation(String) - Static method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns a reference to a CompositeTransformation.
getCompositeTransformationByName(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the ID (trans_id) of the composite transformation specified by name
getCompositeTransformationDefinitionArgPosList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument positions.
getCompositeTransformationDefinitionArgPosList(int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument positions.
getCompositeTransformationDefinitionDescription(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's argument definition (only the description field).
getCompositeTransformationDefinitionDescriptionList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the description field).
getCompositeTransformationDefinitionDescriptionList(int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the description field).
getCompositeTransformationDefinitionElementNR(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepositoryExtension
 
getCompositeTransformationDefinitionFieldName(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's argument definition (only the field_name field).
getCompositeTransformationDefinitionFieldNameList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the field_name field).
getCompositeTransformationDefinitionFieldNameList(int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the field_name field).
getCompositeTransformationDefinitionIsReturnedValue(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns whether a particular transformation's argument stores a returned value after the transformation's invocation, or not.
getCompositeTransformationDefinitionIsReturnedValueList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument types (if they store a returned value or not).
getCompositeTransformationDefinitionRefPos(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepositoryExtension
 
getCompositeTransformationDefinitionTableName(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's argument definition (only the table_name field).
getCompositeTransformationDefinitionTableNameList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the table_name field).
getCompositeTransformationDefinitionTableNameList(int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a particular transformation's list of argument definitions (only the table_name field).
getCompositeTransformationDefinitionType(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepositoryExtension
 
getCompositeTransformationDefinitionTypeInstance(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepositoryExtension
 
getCompositeTransformationDescription(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the description of the composite transformation specified by trans_id
getCompositeTransformationExecutionArgId(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a sequence of arguments ID in the execution of a particular composite transformation
getCompositeTransformationExecutionArgIdList(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of sequence of arguments identifiers of a particular composite transformation's execution
getCompositeTransformationExecutionPcList(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of program counters of a particular composite transformation's execution.
getCompositeTransformationExecutionStId(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns the statement ID in the execution of a particular composite transformation
getCompositeTransformationExecutionStIdList(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of statement identifiers of a particular composite transformation's execution.
getCompositeTransformationExecutionTransIdList() - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of sequence of transformation identifiers that are being executed
getCompositeTransformationInvocationArgIdList() - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns a list of sequence of arguments identifiers in the invocation of transformations
getCompositeTransformationName(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the name of the composite transformation specified by trans_id
getCompositeTransformationPreservesEquivalence(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns whether the composite transformation specified by trans_id preserves schema equivalence.
getCompositeTransformationProgramArgId(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the sequence of arguments ID that is going to be used at the specified pc of a transformation's template program.
getCompositeTransformationProgramArgIdList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a list of sequence of arguments identifiers of a particular composite transformation's template program, ie the sequences of arguments that are going to be used at each program counter.
getCompositeTransformationProgramPcList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a list of program counters of a particular composite transformation's template program.
getCompositeTransformationProgramStId(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the statement ID of the statement that is going to be executed at the specified pc of a transformation's template program.
getCompositeTransformationProgramStIdList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns a list of statement identifiers of a particular composite transformation's template program, ie the statements that are going to be executed at each program counter.
getCompositeTransformationRecord() - Method in class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
getCompositeTransformationReturnedValuesDefinitionArgId(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the sequence of arguments ID that defines the returned values of the transformation
getCompositeTransformations(boolean) - Static method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns an array of CompositeTransformation objects.
getCompositeTransformationsDescriptionList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the descriptions of all the composite transformations found in the TTR
getCompositeTransformationsDescriptionList(boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the descriptions of all the composite transformations found in the TTR that preserve schema equivalence
getCompositeTransformationsNameList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the names of all the composite transformations found in the TTR
getCompositeTransformationsNameList(boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the names of all the composite transformations found in the TTR that preserve schema equivalence
getCompositeTransformationsPreservesEquivalenceList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the preserves_equivalence field of all the composite transformations found in the TTR
getCompositeTransformationsTransIdList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the IDs of all the composite transformations found in the TTR
getCompositeTransformationsTransIdList(boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the IDs of all the composite transformations found in the TTR that preserve schema equivalence
getConcatenationOp() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
getConfigFileName() - Static method in class uk.ac.ic.doc.automed.DSR
Returns the name of the file used for data source definitions.
getConnectionPoint(Point) - Method in interface uk.ac.ic.doc.automed.editor.DrawableVertex
Calculate the Point where a DrawableArc connecting to this DrawableVertex should be drawn to, no
getConnectionPoint(Point) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
 
getConnectionPoint(Point) - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
 
getConnectionPoint(Point) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawNodalVertex
 
getConnectionPoint(Point) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex
 
getConstraint() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the constraint associated with the transformation.
getConstraint() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getConstraintDefinition(String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Return the definition of a constraint used within this Construct.
getConstraintReferencedConstructs(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns all the objects in a SchemaObject's scheme that are correspond to positions in the SchemaObject's scheme of type SCHEME_TYPE_CONSTRUCT
getConstraints() - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
getConstruct() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the construct type of the schema object.
getConstruct() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getConstruct() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
getConstruct() - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
getConstruct(int) - Static method in class uk.ac.ic.doc.automed.reps.Construct
Returns the Construct identified by the given construct identifier (CID).
getConstruct(String) - Method in class uk.ac.ic.doc.automed.reps.Model
Returns the named construct in the model or throws an AutoMedException if the construct name doesn't exist in the model.
getConstructByCID(int) - Static method in class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
 
getConstructClass() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the class of the construct.
getConstructClass(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructClassString(int) - Static method in class uk.ac.ic.doc.automed.reps.Construct
 
getConstructConstraint(int, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructDescription() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns a printable description of the construct including all of its schemes.
getConstructMID(int) - Static method in class uk.ac.ic.doc.automed.MDR
Gets the Model Identifier for a given construct
getConstructModelingProgramMethod(int, int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the method that is going to be invoked at the specified pc of a construct's modeling program.
getConstructModelingProgramMethodList(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns a list of method invocations of a particular construct's modeling program, ie the methods that are going to be invoked at each program counter.
getConstructModelingProgramPcList(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns a list of program counters of a particular construct's modeling program.
getConstructName(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructNames(int) - Static method in class uk.ac.ic.doc.automed.MDR
Gets a list of all construct names for a modelling language
getConstructProperty(int, int, String, boolean) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructs() - Method in class uk.ac.ic.doc.automed.reps.Model
Returns an array of all the constructs in the model.
getConstructs(int) - Static method in class uk.ac.ic.doc.automed.MDR
Get the CIDs of all constructs for a modelling language
getConstructSchemeArgCID(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructSchemeCount(int) - Static method in class uk.ac.ic.doc.automed.MDR
Gets the count of construct scheme arguments for this construct, the number is also the highest index (argument pos) usable as the construct scheme numbering starts at 1
getConstructSchemeHDMType(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructSchemeLowerBound(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructSchemeType(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructSchemeUpperBound(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getConstructType() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getCurrent(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
getCurrentModelSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getCurrentSchema() - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
getCurrentToken() - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getCurrentToken(int) - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getCurrentToken(int, int) - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getData() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return all the attributes of this tuple as an array
getDatafromYattaData(Vector) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
getDataSourceConnection(String) - Static method in class uk.ac.ic.doc.automed.DSR
Gets a connection to the named data souce.
getDataSourceConnection(String, String, String) - Static method in class uk.ac.ic.doc.automed.DSR
Gets a connection to the named data souce.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.MDR
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of the repository in the local database.
getDataSourceName() - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the name of the repository in the local database.
getDataSourceProperty(String, String) - Static method in class uk.ac.ic.doc.automed.DSR
Returns the named property for the named data source as defined in the configuration file.
getDataType() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getDBDriver() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the database driver used for connecting to the database.
getDebugLevel() - Static method in class uk.ac.ic.doc.automed.STR
Return the value of the debug level at set by STR.setDebugLevel(int)
getDefaultDataSource() - Static method in class uk.ac.ic.doc.automed.DSR
 
getDefaultSchemaName(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapperFactory
 
getDefaultSchemaName(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.OracleWrapperFactory
 
getDefaultSchemaName(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the name of the default schema for the type of database being wrapped.
getDefaultSchemaName(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.PostgresWrapperFactory
 
getDefaultUserName() - Static method in class uk.ac.ic.doc.automed.DSR
 
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.OracleWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return the default AutoMedWrapperFactory that is used to generate Schema instances from information in a data sources
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.PostgresWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDefaultWrapperFactory() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Returns a new instance of the default wrapper factory for this wrapper
getDegree() - Method in class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
 
getDelta() - Method in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
getDelta() - Method in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
getDependentSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Return all SchemaObjects which have a reference to this SchemaObject in their scheme.
getDependentSchemaObjects(Construct) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Return those SchemaObjects of a particular Construct which have a reference to this SchemaObject in their scheme.
getDependentSchemaObjects(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the object identifiers (OBID) in ascending order of all the schema objects that depedent on the existanace of some other object.
getDependentSchemaObjects(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return all SchemaObjects of a particular Construct in this Schema which have a reference to the given SchemaObject in their scheme.
getDependentSchemaObjects(SchemaObject, Construct) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return those SchemaObjects of a particular Construct in this Schema which have a reference to the given SchemaObject in their scheme.
getDepth(Document) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
 
getDescription() - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Returns the description of this TransformationArgumentDefinition.
getDescription() - Method in class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
Returns the description of this StatementArgumentDefinition.
getDescription() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns the description of this CompositeTransformation.
getDescription() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
getDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
Returns the description of the template transformation
getDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
getDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
getDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
getDistinctInstances() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
getDouble() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns the value of the double contained in the Cell
getDrawingObject(int) - Static method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
getDrawingObject(SchemaObject, Construct) - Static method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
getDrawingObjectRepresenting(SchemaObject) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
getDriver() - Static method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
The name of the driver string that identifies this wrapper
getE() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 
getEdgeInstances(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Return all the instances of the passed edge type as a LinkedList of Span elements, each Span representing an instance of an edge.
getEdgePosition(Point) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
getEdgePosition(Point) - Method in class uk.ac.ic.doc.automed.gui.Line
 
getEdgePosition(Point) - Method in class uk.ac.ic.doc.automed.gui.Box
 
getEdgePosition(Point) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
getEdges() - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
getEditorPanel() - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
getElement() - Method in class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation
 
getElement(int) - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 
getElement(SchemaObject, boolean) - Static method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getElement(String, boolean) - Static method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getElementByUID(Document, String) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Returns the node in the input doc that has an AutoMedID with the value of elementUID
getElementByUIDNoSchema(Document, String) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
This method will return the first occurrence of an element containing an AutoMedID whose suffix after "schemaName:" matches the input elementUID.
getElementChildCount(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Counts the element children of the given node.
getElementLevel(Node, int) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Returns all the element nodes in a given level.
getElementNodeOrder(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Returns the order of element node n in its parent's children NodeList - takes into account only elements.
getElements() - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
getElements() - Method in class uk.ac.ic.doc.automed.matching.modules.SimilarCluster
 
getElements() - Method in class uk.ac.ic.doc.automed.matching.modules.Clusterer
 
getElements() - Method in class uk.ac.ic.doc.automed.matching.modules.Cluster
 
getElements(SchemaObject[], boolean) - Static method in class uk.ac.ic.doc.automed.matching.Integrator
 
getElementsByUID(Document, String) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Given a schema UID (schemaName:elementName:counter), this method runs through the given instance, and returns all elements with an instance UID starting with the given schema UID.
getEntityEdgePosition(Point) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
getEnvironment() - Method in class uk.ac.bbk.dcs.automed.qproc.Evaluator
 
getExpression() - Method in class uk.ac.ic.doc.automed.reps.HDMConstraint
 
getExtend(boolean) - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
getFeatureNames() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Return the list of feature names provided by the wrapper factory.
getFeatureNames() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return a string list of features supported by this wrapper, where the first one is bit zero in the feature bit map, second bit one, etc
getFeatures() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Return the bitwise or of all the features in use for a wrapper.
getField(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return a field from the query node, where fields are counted from zero.
getField(int) - Method in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
Return a field from the query node.
getFieldName() - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Returns the fieldname of this TransformationArgumentDefinition.
getFieldName() - Method in class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
Returns the fieldname of this StatementArgumentDefinition.
getFile(String) - Static method in class uk.ac.ic.doc.automed.Util
 
getFinalDoc() - Method in class uk.ac.bbk.dcs.automed.xml.XMLTransformer
 
getFinalSchema() - Method in class uk.ac.bbk.dcs.automed.xml.XMLTransformer
 
getFinalSchema() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformationRecord
 
getFinalSchemaName() - Method in class uk.ac.bbk.dcs.automed.xml.XMLTransformer
 
getFirstElement() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 
getFoldFunction(String) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunctionTable
 
getFontMetrics() - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
Utility method for all editor drawing tools to use when they need to obtain the FontMetrics of an EditorPanel
getFontMetrics(JComponent) - Static method in class uk.ac.ic.doc.automed.editor.Gui
Utility method for all editor drawing tools to use when they need to obtain the FontMetrics of a JComponent
getForegroundColor() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getForegroundColor() - Method in class uk.ac.ic.doc.automed.reps.Construct
Return the default foreground colour to be used from drawing SchemaObjects of this Construct.
getForegroundColor() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getForegroundColor() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getForegroundColor() - Method in class uk.ac.ic.doc.automed.reps.Model
Return the default foreground colour to be used from drawing SchemaObjects of this Model.
getForegroundColor() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getForest() - Method in class uk.ac.bbk.dcs.automed.graph.Forest
 
getForwardDegree() - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
getFrame() - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
getFromOBID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema object identifier (OBID) of the input of the transformaiton (fromObject).
getFromObject() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getFromObjectsUnmatched() - Method in class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getFromSchema() - Method in class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getFromSchema() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getFromSID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema identifier (SID) of the originating schema.
getFunction() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the function of the transformation.
getFunction() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getFunction(String) - Method in class uk.ac.bbk.dcs.automed.qproc.Environment
 
getFunction(String) - Method in class uk.ac.bbk.dcs.automed.qproc.FunctionTable
Returns the BuiltInFunction corresponding to the string name.
getGenEdgePosition() - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
getGeneralConstruct() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getGeneralConstruct(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns a SchemaObject corresponding to the "general" entity of a generalization.
getGeneralisationExtend() - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
getGraph() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
getGraphicObject(SchemaObject) - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
getGraphics() - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
getGroupNo(int, int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the group no of ssdpattern and schemaobject in the SSMDR.
getGroupNoByOBID(int) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getHDMNetwork() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getHDMType() - Method in class uk.ac.ic.doc.automed.reps.Scheme
 
getHDMType() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the HDM type of the ConstructScheme.
getHDMTypeString(int) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getHDMTypeString(int, boolean) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getIcon(String) - Static method in class uk.ac.ic.doc.automed.templates.gui.Accessories
 
getIconHeight() - Method in class uk.ac.ic.doc.automed.gui.ArrowIcon
 
getIconWidth() - Method in class uk.ac.ic.doc.automed.gui.ArrowIcon
 
getIncomingEdges() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
getInput(int) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
getInput(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
getInputArguments() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
getInputDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOM
 
getInputItems() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
getInsertableSQLValue(Object, int) - Static method in class uk.ac.ic.doc.automed.Util
 
getInstanceDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOM
 
getInstancesSorted() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getInt(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return a particular attribute from a tuple (counting from one) as a 32 bit integer
getIntegerConstructProperty(int, int, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
getIntegratedSchema() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
getIsReturnedValue() - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Returns the type of this TransformationArgumentDefinition.
getKnownSchemaObject(int) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Similiar to SchemaObject.getSchemaObject(int) except that it throws a runtime exception InconsistentException if the obid is not found.
getKnownSchemaObject(int) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Use instead of #getSchemaObject(int) where you are sure that the sid is valid for the transformation.
getKnownSchemaObject(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Use instead of Transformation.getSchemaObject(Schema) where you are sure that the Schema is valid for the transformation.
getKnownTransformation(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
getLabel() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Get the text used to label this SchemaObject.
getLabel() - Method in class uk.ac.ic.doc.automed.reps.Network
Get the text used to label this Network.
getLabel() - Method in class uk.ac.ic.doc.automed.reps.Schema
Get the text used to label this Schema.
getLabel() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getLabelPosition() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getLabelPosition() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLabelPosition() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getLabelPosition() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getLabelXPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getLabelXPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLabelXPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getLabelXPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getLabelYPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getLabelYPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLabelYPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getLabelYPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getLastExtSchema() - Method in class uk.ac.ic.doc.automed.reps.Pathway
Returns the last extentional Schema in the pathway.
getLeafs() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getLevel(Node, int) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Returns all the nodes in a given level.
getListElement() - Method in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
getLocation() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getLower() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the lower bound indicating the minimum occurence of the ConstructScheme.
getManager() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getMappings() - Method in class uk.ac.ic.doc.automed.matching.Aggregator
 
getMaximum(double[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getMDR_DataSourceName() - Static method in class uk.ac.ic.doc.automed.MDR
Deprecated. use MDR.getDataSourceName() instead
getMedium(double[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getMethodArgumentsPosList(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns a particular methods's list of argument positions.
getMethodArgumentsType(int, int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns a particular method's argument type.
getMethodArgumentsTypeList(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns a particular methods's list of argument types.
getMethodByName(String, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the ID (meth_id) of the method specified by name and class, or -1 if a method with the specified name doesn't exist in the specified class.
getMethodCall() - Method in class uk.ac.ic.doc.automed.reps.ModelingStatement
Returns the method to be called by this ModelingStatement.
getMethodName(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the name of the method specified by meth_id
getMethodsMethIdList() - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the IDs of all the methods found in the SMR
getMethodsNameList() - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Returns the names of all the methods found in the SMR
getMID() - Method in class uk.ac.ic.doc.automed.reps.Model
Returns the repository identifer of the model.
getMinimum(double[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getModel() - Method in class uk.ac.ic.doc.automed.reps.Construct
Return the Model to which this Construct belongs
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Return the source oriented Model used to represent the Schema of the datasource.
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the `raw' relational Model used to represent the Schema for the SQL datasource wrapper.
getModel() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
Return the source oriented Model, YATTA Model, used to represent the semistructured datasource.
getModel() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
 
getModel() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
Returns the model of the template transformation
getModel() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
getModel(int) - Static method in class uk.ac.ic.doc.automed.reps.Model
Returns a reference to the Model with the given MID.
getModel(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
Returns a reference to the Model with the given modelName.
getModelBaseName() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Return text used as basis for generating Model names
getModelByName(String) - Static method in class uk.ac.ic.doc.automed.MDR
 
getModelDescription() - Method in class uk.ac.ic.doc.automed.reps.Model
Returns a description of the model, each construct along with their schemes is listed in a way suitable for printing.
getModelDescription(boolean) - Method in class uk.ac.ic.doc.automed.reps.Model
Returns a description of the model, each construct along with its schemes are listed in a way suitable for printing.
getModelingProgram() - Method in class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
Returns the ModelingProgram that defines the graphical representation of this Construct.
getModelingProgramByCID(int) - Static method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Returns the ModelingProgram of a Construct.
getModelingStatementAt(int) - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Returns the statement at the specified program counter in this program.
getModelingStatements() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Returns an array containing all of the statements in this program in the correct order.
getModelName() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Find the name of the Model that will be used when a new wrapper is generated
getModelName(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
getModelNames() - Static method in class uk.ac.ic.doc.automed.MDR
Gets a list of all modelling language names in the MDR
getModels() - Static method in class uk.ac.ic.doc.automed.MDR
Gets a list of all modelling language identifiers in the MDR
getModels() - Static method in class uk.ac.ic.doc.automed.reps.Model
Returns an array of all models.
getModelsHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getModelsSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getName() - Method in class uk.ac.ic.doc.automed.reps.HDMElement
 
getName() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the name of the construct.
getName() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getName() - Method in class uk.ac.ic.doc.automed.reps.Schema
Find the name of the schema.
getName() - Method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the name of the protocol.
getName() - Method in class uk.ac.ic.doc.automed.reps.Model
Returns the name of the model.
getName() - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 
getName() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
getName() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getName() - Method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getName() - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.FoldFunction
 
getName() - Method in class uk.ac.ic.doc.automed.templates.Statement
Returns the name of this Statement.
getName() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns the name of this CompositeTransformation.
getName() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
getName() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
Returns the name of the template transformation
getName() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
getName() - Method in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
getName(int) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns the name of a schema from its SID without instantiating it
getNegativePostconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getNegativePreconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getNetwork() - Method in class uk.ac.ic.doc.automed.reps.Node
Returns the network this node belongs to
getNetwork(Schema, String) - Static method in class uk.ac.ic.doc.automed.reps.Network
Returns the complete undirected network that contains schema s.
getNetworkHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworkNamesHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworkNamesSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworks() - Static method in class uk.ac.ic.doc.automed.reps.Network
Return a List that contains all Networks held in the repository.
getNetworks(boolean) - Static method in class uk.ac.ic.doc.automed.reps.Network
Return a list that contains all Networks held in the repository.
getNetworksHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworksSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNetworkSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getNextItemInList(InputItem) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
getNextKey() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
getNextRow() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
 
getNextToken() - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getNextToken(int) - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getNextToken(int, int) - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
getNode(int) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
getNode(Node) - Method in class uk.ac.ic.doc.automed.reps.Network
Deprecated.  
getNode(Schema) - Static method in class uk.ac.ic.doc.automed.reps.Node
returns the node for a schema if one exists or null otherwise
getNode(Schema) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns the network node representing the supplied schema
getNode(String) - Static method in class uk.ac.ic.doc.automed.reps.Node
returns the node for a schema if one exists or null otherwise
getNode(String) - Method in class uk.ac.ic.doc.automed.reps.Network
Returns the network node representing the named schema
getNode(String) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
getNodeDepth(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Returns the depth of node n.
getNodeInstances(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given a node type return all the instances in the HDM store as a LinkedList with elements of type Span, each element representing an instance
getNodeOrder(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
 
getNodes() - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
getNonAtomicRelationship(SchemaElementPair) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
getNumbers(String[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getOBID() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the schema object identifier (OBID) of a schema object.
getOBID() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
getOBIDBySFIDSPID(int, int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the ID of schemaobject in the SSMDR for the particular ssdformat and ssdpattern.
getOBIDBySPID(int) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getObjectID() - Method in class uk.ac.ic.doc.automed.IntegrityException
Return the object indentifier of the the object, that the manipulation of caused this exception.
getObjectSchemeNames(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns an Object array of an object's scheme.
getObjectSchemeNamesString(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the scheme representation (of type String}) of an object's scheme.
getOpenSchemeBracket() - Static method in class uk.ac.ic.doc.automed.STR
Return String used to open schemes
getOpenSchemeBracket() - Static method in class uk.ac.ic.doc.automed.reps.Schema
Find what string is used to deliminate the opening of a scheme name, such as the "<<" in "<<person>>" or "<<person,name>>".
getOperation() - Method in class uk.ac.ic.doc.automed.IntegrityException
Return the operation attempted on the object that caused this exception.
getOperator() - Method in class uk.ac.ic.doc.automed.wrappers.SchemeQuery
Return the operator type that this query node represents.
getOption(String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return an option setting.
getOptionKeys() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
Return the list of option setting key provided by the wrapper.
getOptionKeys() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Return the list of option setting key provided by the wrapper factory.
getOpts(String, String[]) - Static method in class uk.ac.ic.doc.automed.Util
 
getOriginalSchemas() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
getOtherSchema(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schemas of the transformation.
getOutgoingEdges() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
getOutput(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
getOutput(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
getPairs() - Method in class uk.ac.ic.doc.automed.matching.Aggregator
 
getParent() - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 
getParents() - Method in class uk.ac.ic.doc.automed.reps.Node
If the network this node belongs to is directed then returns all the adjacent nodes that are parents of this node, otherwise its behaviour is defined by the type of network but the parents will be a subset of adjacent.
getPassword() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the password of the user, if it exists
getPath(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
 
getPattern() - Method in class uk.ac.ic.doc.automed.ssd.SSDPattern
 
getPattern() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getPattern() - Method in class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation
 
getPattern() - Method in class uk.ac.ic.doc.automed.matching.modules.Cluster
 
getPattern(String) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
getPatternByName(String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the pattern identifier (PID).
getPatternByName(String) - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getPatternIDs() - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the IDs of all the patterns found in the SSMDR.
getPatternName(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the name of the pattern.
getPatternSize() - Method in class uk.ac.ic.doc.automed.matching.modules.Clusterer
 
getPatternValue() - Method in class uk.ac.ic.doc.automed.ssd.SSDPattern
 
getPatternValue(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the value (an actual pattern in regular expression) of the pattern.
getPc() - Method in class uk.ac.ic.doc.automed.templates.StatementExecution
Returns the program counter of this StatementExecution.
getPCDATAChildCount(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Counts the element children of the given node.
getPCDATANodeOrder(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
 
getPID() - Method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the protocol identifier (PID).
getPID() - Method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getPIDByName(String) - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getPIDBySPID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the ssdpattern identifier (SPID).
getPK(SchemaObject, ArrayList) - Method in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
getPKColumns(SchemaObject, ArrayList) - Method in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
getPosition() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getPosition() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getPosition() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getPosition() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getPosition() - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Returns the position in the transformation's argument definition list of this TransformationArgumentDefinition.
getPosition() - Method in class uk.ac.ic.doc.automed.templates.TemplateArgument
Returns the position of this TemplateArgument.
getPosition() - Method in class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
Returns the position in the statement's argument definition list of this StatementArgumentDefinition.
getPosition() - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgument
Returns the position of this RuntimeArgument.
getPosition() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
getPosition() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
getPositionable() - Method in interface uk.ac.ic.doc.automed.editor.DrawableVertex
 
getPositionable() - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
 
getPositionInReferencedArgumentSequence() - Method in class uk.ac.ic.doc.automed.templates.TemplateArgument
Returns the position in the referenced arguments sequence.
getPositivePostconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getPositivePreconditions() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getPreferredSize() - Method in class uk.ac.ic.doc.automed.gui.ToolTip
 
getPrimaryKeyOfTable(Schema, SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the primary key of a table SchemaObject.
getProjected() - Method in class uk.ac.ic.doc.automed.matching.modules.MapDisplay
 
getProperty(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns a property associated with this AccessMethod.
getProtocol() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the Protocol used for connecting to the database.
getProtocol() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Returns the Protocol associated with the Wrapper.
getProtocol(int) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the Protocol with the given PID.
getProtocol(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Returns the Protocol with the given protocolName.
getProtocolByName(String) - Static method in class uk.ac.ic.doc.automed.STR
Returns the protocol identifier (PID) of the specified protocol name.
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
The name of the Protocol in the repository used to represent JDBC connections.
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
The name of the Protocol that this wrapper uses
getProtocolName() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
The name of the Protocol in the repository used to represent flat files with a YATTA schema.
getProtocolName() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
The name of the Protocol in the repository used to represent JDBC connections.
getProtocolName() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
getProtocolName() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
The name of the Protocol in the repository used to represent the HDM store.
getProtocolName(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of the given protocol identifier (PID).
getQuerySchemaObjects(int, String, Schema) - Static method in class uk.ac.ic.doc.automed.tml.TML
Returns an ArrayList of OBIDs referenced by the given query.
getQueryScheme() - Method in class uk.ac.ic.doc.automed.wrappers.YattaQuery
 
getQueryVariables() - Method in class uk.ac.ic.doc.automed.wrappers.YattaQuery
 
getRandomInstance() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getRefAction() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRefActionString() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRefConstraint() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRefConstructName() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getReferencedArgumentsAsArray() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
getReferencedArgumentsAsVector() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
getReferencedArgumentSequence() - Method in class uk.ac.ic.doc.automed.templates.TemplateArgument
Returns the TemplateArgumentSequence this TemplateArgument refers to.
getReferencedConstruct() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getReferencedConstruct(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the object a SchemaObject is attached to.
getReferencedConstructs() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getReferencedConstructs(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns all the objects in a SchemaObject's scheme that are correspond to positions in the SchemaObject's scheme of type SCHEME_TYPE_CONSTRUCT that are of NODAL class.
getReferencedField() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getReferencedField(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the field of a primary key SchemaObject.
getReferencedObjects(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns all the objects in a SchemaObject's scheme that are correspond to positions in the SchemaObject's scheme of type SCHEME_TYPE_CONSTRUCT.
getReferencedSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the set of SchemaObjects that are referenced directly or indirectly by this SchemaObject.
getReferencedSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns all the schema objects referenced in a transformation.
getReferencedSchemaObjectsInQuery() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns all the schema objects referenced in the query of a transformation.
getReferencedTable() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getReferencedTable(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the table of a primary key SchemaObject.
getReferencePosition() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
getReferringObjects(Schema, SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the SchemaObject objects that include object in their schemes.
getRefFromObjName() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRefFunction() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRefModelName() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRefPos() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
getRefSchemaObject() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Returns the SchemaObject that this Scheme wraps
getRefToObjName() - Method in class uk.ac.ic.doc.automed.tml.TempTML
 
getRelatedTables(ArrayList) - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
getRelationship() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
 
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Superset
 
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Subset
 
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
getRelationship() - Static method in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
getRelationship(BidirectionalDegree) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalMap
 
getRelationship(SchemaElementPair) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
getRelationship(SchemaElementPair) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
getRelationship(SchemaElementPairRelationship[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
getRelationships() - Method in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
getRelationships() - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
getRelationships(ArrayList) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
getRelationships(BidirectionalMap) - Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
 
getRelationshipsColumnEdges(double, double, double, double) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
getRelationshipsColumns(double, double, double, double) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
getRelationshipsTables(double, double, double, double) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
getRelativeDegrees(ArrayList, ArrayList) - Static method in class uk.ac.ic.doc.automed.matching.modules.ClustererClassifier
 
getRelativeTo() - Method in interface uk.ac.ic.doc.automed.editor.DrawableVertex
 
getRelativeTo() - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
If the coordinates of the Positionable that this Drawable is for are specified relatitive to some other Positionables, return those other Positionables
getRenamedObject() - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
getRepObject() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getRepObject() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getRepObject() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getRepObject() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getRepTran() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getRequiredNumberOfElements() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
getResult() - Method in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
getReturnedArgumentsDefinition() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns the arguments that store returned values after the transformation's invocation.
getReverseTransformation() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the reverse transformation of the given transformation.
getRoots() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getRuntimeArgumentSequence(int) - Static method in class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
Returns the reference to the RuntimeArgumentSequence with the given ID.
getRuntimeArgumentSequences() - Static method in class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
Returns an array of all RuntimeArgumentSequence objects that have RuntimeArgument objects.
getSchema() - Method in class uk.ac.ic.doc.automed.reps.Node
Returns the schema at this node in the network
getSchema() - Method in class uk.ac.ic.doc.automed.reps.BadSchemaException
Returns the bad schema.
getSchema() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the Schema to which the SchemaObject belongs.
getSchema() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the schema that represents the database to which the access method connects.
getSchema() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Returns the Schema that represents in the datasource in terms of SchemaObjects in a data source oriented manner.
getSchema() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSchema(int) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema object which has the given schema identifier (SID).
getSchema(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns the Schema object with the given name.
getSchema(String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
A method that creates in the repository a Schema and AccessMethod from the supplied information, together with a Protocol if necessary, and returns the AccessMethod.
getSchemaBackgroundColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaByName(String) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) of the schema specified by name.
Assumption:schema names are unique.
getSchemaDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
getSchemaForegroundColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaId() - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
getSchemaId() - Method in interface uk.ac.ic.doc.automed.templates.gui.InteractiveSchemaDisplay
 
getSchemaIDs() - Static method in class uk.ac.ic.doc.automed.STR
Returns the IDs of all the schemas found in the STR.
getSchemaIDs() - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of SID of all the schemas found in the STR.
getSchemaLabelPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaName() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
getSchemaName() - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
getSchemaName(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of the schema with the given schema identifier.
getSchemaNames() - Static method in class uk.ac.ic.doc.automed.STR
Returns the name of all the schemas found in the STR.
getSchemaNames() - Static method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of names of all the schemas found in the STR.
getSchemaNetworkHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getSchemaNetworkSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
getSchemaObject() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Returns the SchemaObject that this Scheme element is contained within, i.e.
getSchemaObject() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
getSchemaObject(int) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the SchemaObject reference that has the given schema object identifier (OBID).
getSchemaObject(Schema) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the SchemaObject of the transformation.
getSchemaObject(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getSchemaObject(String, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return the SchemaObject that has the supplied name in this schema.
getSchemaObjectBackgroundColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjectByName(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Deprecated. Return the SchemaObject that has the supplied name in this schema. Note that the String supplied must match exactly the name of the SchemaObject as returned by SchemaObject.getSchemeNamesString()
getSchemaObjectByOBID(int) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
Deprecated. use SchemaObject.getSchemaObject(int) instead
getSchemaObjectCID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the construct identifier (CID) of the schema object.
getSchemaObjectForegroundColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjectLabelPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjectPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Construct
Find all SchemaObjects that are instances of a particular Construct.
getSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of schema objects (of class SchemaObject) that belong to the schema.
getSchemaObjects(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the object identifiers (OBID) in ascending order of all the schema objects that belong to a particular schema.
getSchemaObjectsByCID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the object identifiers (OBID) in ascending order of all the schema objects that are instances of a certain construct type, in order of the OBID to which they belong
getSchemaObjectSID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) that a schema object belongs to.
getSchemaObjectTextColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaObjectValue(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the name (value) of the schema object.
getSchemaPos(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemas() - Method in class uk.ac.ic.doc.automed.reps.Pathway
Return as an array the Schemas that appear in the Transformations of this Pathway.
getSchemas() - Static method in class uk.ac.ic.doc.automed.reps.Schema
Find all Schema instances held in the repository.
getSchemas() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schemas of the transformation.
getSchemas() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
getSchemas() - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
getSchemaSIDs() - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema identifier (SID) of all the schemas found in the STR.
getSchemaSubnetSID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the subnet schema id of this schema.
getSchemaTextColor(int) - Static method in class uk.ac.ic.doc.automed.STR
 
getSchemaUIDDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
getSchemaUIDDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
getSchemaUIDDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOM
 
getScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns an array of ConstructScheme objects representing the scheme of the construct.
getSchemeArray(Construct, String[]) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
This method is used to retrieve the Object [] which defines the schema of a newly added object.
getSchemeDefinition() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
All SchemaObjects when they are created by methods such as Schema.createSchemaObject, Schema.applyAddTransformation and Transformation.createAddTransformation require that an Object array be supplied that defines the scheme of the new SchemaObject.
getSchemeList() - Method in class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
getSchemeNames() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
A shorthand for #getSchemeNames(false)
getSchemeNames(boolean) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Return the names of all objects in the scheme of this SchemaObject.
getSchemeNames(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeNames(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeNamesString() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Same as calling #Schema.getSchemaNameString(false)
getSchemeNamesString(boolean) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the scheme representation this SchemaObject using brackets as set by Schema.setOpenCloseSchemeBracket.
getSchemeNamesString(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeNamesString(int, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeOBIDList(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of all schema object identifiers (OBID) by which a particular schema object is referenced.
getSchemeObjects() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns an array of schema objects that are contained in the scheme of this schema object.
getSchemePos() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Returns the position of this Scheme in the definition of the SchemaObject it defines.
getSchemePosList(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of positions in the scheme of a particular schema object.
getSchemeSOBID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the object identifier (SOBID) of the referenced schema object in the specified schema object's scheme at the given position.
getSchemeSOBIDList(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of all schema object identifiers (SOBID) referenced by a particular schema object.
getSchemeString() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeString(Schema) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getSchemeType() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the scheme type of the ConstructScheme.
getSchemeTypeString(int) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getSchemeTypeString(int, boolean) - Static method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
getSecondElement() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 
getSectionDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.STR
Gets the debug level which the section of code has been set to.
getSequenceId() - Method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Returns the sequence ID of this TemplateArgumentSequence.
getSequenceId() - Method in class uk.ac.ic.doc.automed.templates.TemplateArgument
Returns the sequence identifier of this TemplateArgument.
getSequenceId() - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
Returns the sequence ID of this RuntimeArgumentSequence.
getSequenceId() - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgument
Returns the sequence identifier of this RuntimeArgument.
getSFID() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSFID(String) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSFIDByName(String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the ssd format identifier (SFID) of the ssd format specified by name.
Assumption:ssd format names are unique.
getSFIDBySID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the ssdformat identifier (SFID) of the ssd format specified by schema identifier (SID).
getShape() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getSID() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns the schema identifier (SID) of the schema.
getSIDBySFID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the schema identifier (SID) of the ssd format specified by ssd format identifier (SFID).
getSimilarityDegree() - Method in class uk.ac.ic.doc.automed.matching.modules.SimilarCluster
 
getSize() - Method in class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation
 
getSmartQuoting() - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
getSMR_DataSourceName() - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Deprecated, use getDataSourceName instead
getSpans(int, int) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
For the edge specified return a LinkedList with each element of type Span representing a span in that edge.
getSpecEdgePosition() - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
getSpecialConstructs() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getSpecialConstructs(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns an array of SchemaObject objects corresponing to the sub-entities of a generalization.
getSPID() - Method in class uk.ac.ic.doc.automed.ssd.SSDPattern
 
getSPID(int) - Method in class uk.ac.ic.doc.automed.ssd.SSDPattern
 
getSPIDByOBID(int) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSPIDByPID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the recent ssdpattern identifier (SPID) of the specified pattern.
getSPIDBySFIDOBID(int, int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the ID of ssdpattern in the SSMDR for the particular ssdformat and schemaobject.
getSPIDsBySFID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the IDs of all the ssdpatterns found in the SSMDR.
getSQLQuery(int) - Method in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Return the SQLQuery held in a certain field, or null if the field is empty.
getSQLTableReference(Object[]) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Given the scheme of a table, get the name SQL uses to reference that table.
getSQLType(String) - Static method in class uk.ac.ic.doc.automed.Util
 
getSQLTypeName(int) - Static method in class uk.ac.ic.doc.automed.Util
 
getSSDFormat() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
getSSDFormat(int) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDFormat(String) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDFormatBySchema(Schema) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDFormatIDs() - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the IDs of all the ssd formats found in the SSMDR.
getSSDFormatName(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the name of the ssd format with the given ssd format identifier.
getSSDFormatName(int) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDFormatNames() - Static method in class uk.ac.ic.doc.automed.SSMDR
Returns the name of all the ssd formats found in the SSMDR.
getSSDPatternBySPID(int) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDPatternIDs() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
getSSDSource() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
getSSMDR_DataSourceName() - Static method in class uk.ac.ic.doc.automed.SSMDR
Deprecated. use getDataSourceName()
getStandardDeviation(double[]) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getStandardDeviation(double[], double) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
getStatement() - Method in class uk.ac.ic.doc.automed.templates.StatementExecution
Returns the Statement of this StatementExecution.
getStatement(int) - Static method in class uk.ac.ic.doc.automed.templates.Statement
Returns a reference to a Statement.
getStatement(String) - Static method in class uk.ac.ic.doc.automed.templates.Statement
Returns a reference to a Statement.
getStatementByName(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns the ID (st_id) of the statement specified by name, or -1 if a statement with the specified name doesn't exist in the TTSR.
getStatementDefinitionArgPosList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's list of argument positions.
getStatementDefinitionDescription(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's argument definition (only the description field).
getStatementDefinitionDescriptionList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's list of argument definitions (only the description field).
getStatementDefinitionFieldName(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's argument definition (only the field_name field).
getStatementDefinitionFieldNameList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's list of argument definitions (only the field_name field).
getStatementDefinitionTableName(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's argument definition (only the table_name field).
getStatementDefinitionTableNameList(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns a particular statement's list of argument definitions (only the table_name field).
getStatementDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
getStatementDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
getStatementDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
getStatementDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
getStatementDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
getStatementDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
getStatementDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
getStatementDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
getStatementDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
getStatementExecutionAt(int) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns a particular StatementExecution in the CompositeTransformations's template program.
getStatementExecutions() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns an array of all the StatementExecution objects in this CompositeTransformation.
getStatementExecutionsForTransformation(int) - Static method in class uk.ac.ic.doc.automed.templates.StatementExecution
Returns all the StatementExecution objects of the specified composite transformation.
getStatementName(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns the name of the statement specified by st_id
getStatements() - Static method in class uk.ac.ic.doc.automed.templates.Statement
Returns an array of all Statement objects.
getStatementsNameList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns the names of all the statements found in the TTSR
getStatementsStIdList() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Returns the IDs of all the statements found in the TTSR
getStId() - Method in class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
Returns the statement identifier defining which statement this StatementArgumentDefinition belongs to.
getStId() - Method in class uk.ac.ic.doc.automed.templates.Statement
Returns the ID of this Statement.
getSTR_DataSourceName() - Static method in class uk.ac.ic.doc.automed.STR
Deprecated. use getDataSourceName()
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
 
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
getStrength() - Method in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
getString() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS
 
getString() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION
 
getString() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
getString(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return a field as a String value.
getString(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Return a particular attribute from a tuple (counting from one) as a String
getStringConstructProperty(int, int, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
getSubGraphs() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
getSubnetSchema() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Find the extensional schema in the same subnetwork as this SchemaObject.
getSubnetSchema() - Method in class uk.ac.ic.doc.automed.reps.Schema
Find the extensional schema in the same subnetwork as this Schema.
getTableDetailsSchemeLength() - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Return the number of fields in a full source table scheme used to reprsent the table details
getTableForeignKeyPoints() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getTableForeignKeyPoints(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the table that a foreign key SchemaObject points.
getTableName() - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Returns the tablename of this TransformationArgumentDefinition.
getTableName() - Method in class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
Returns the tablename of this StatementArgumentDefinition.
getTables(Schema) - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
getTableWithForeignKey() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getTableWithForeignKey(SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns the table of a foreign key SchemaObject.
getTemplateArgumentSequence(int) - Static method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Returns the reference to the TemplateArgumentSequence with the given ID.
getTemplateArgumentSequences() - Static method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Returns an array of all TemplateArgumentSequence objects that have TemplateArgument objects.
getTemplateName() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
getTempPathway(Pathway) - Static method in class uk.ac.ic.doc.automed.tml.TempPathway
 
getTextColor() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getTextColor() - Method in class uk.ac.ic.doc.automed.reps.Construct
Return the default text colour to be used from drawing SchemaObjects of this Construct.
getTextColor() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getTextColor() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getTextColor() - Method in class uk.ac.ic.doc.automed.reps.Model
Return the default text colour to be used from drawing SchemaObjects of this Model.
getTextColor() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getTextNodes(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
 
getTML(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.tml.TML
 
getTmlList() - Method in class uk.ac.ic.doc.automed.tml.TempPathway
 
getToOBID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema object identifier (OBID) of the output of the transformaiton (toObject).
getToObject() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getToObjectsUnmatched() - Method in class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getTool(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
getTool(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
getTool(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
getToSchema() - Method in class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
getToSchema() - Method in class uk.ac.ic.doc.automed.tml.TML
 
getToSID() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the schema identifier (SID) of the resultant schema.
getTranAction(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the action of transformation between two schemas.
getTranConstraint(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the constraint of a transformation between two schemas.
getTranFromObject(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema object to be transformed in a transformation.
getTranFromSchema(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of schema identifiers (SID) from which a particular schema can be derived.
getTranFunction(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the function of a transformation between two schemas.
getTransformation(int, int) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the transformation between two given schemas.
getTransformation(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Returns the transformation between two given schemas.
getTransformationObject(int) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getTransformations() - Static method in class uk.ac.ic.doc.automed.STR
Returns a vector representing all transformations in the repository
getTransformations() - Method in class uk.ac.ic.doc.automed.reps.Pathway
Return as an array the Transformations that make up this Pathway.
getTransformations() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Find the set of Transformations that involve this SchemaObject.
getTransformations() - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an array of all Transformation that go out from a particular schema.
getTransformations() - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
getTransformations() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformationRecord
 
getTransformationsByOBID(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the pairs of schema identifiers (SID) of all the schema transformations that involve the supplied OBID
getTransformationsFrom() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Transformation's that have this schema as the fromSchema field in the transformation table of the STR.
getTransformationsTo() - Method in class uk.ac.ic.doc.automed.reps.Schema
Returns an array of Transformation's that have this schema as the toSchema field in the transformation table of the STR.
getTransId() - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Returns the composite transformation identifier defining which transformation this TransformationArgumentDefinition belongs to.
getTransId() - Method in class uk.ac.ic.doc.automed.templates.StatementExecution
Returns the transformation identifier of the composite transformation this StatementExecution belongs to.
getTransId() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns the ID of this CompositeTransformation.
getTransId() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
getTranToObject(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Returns the schema object as a result of a transformation.
getTranToSchema(int) - Static method in class uk.ac.ic.doc.automed.STR
Returns a list of schema identifiers (SID) which are derived from a particular schema.
getTree() - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
getTreeModel() - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
getType() - Method in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
getType() - Method in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedString
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
 
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Return the Type (INTEGER, TUPLE, ...) of this AutoMedType
getType() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
 
getType() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
getType() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
getType() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
getType() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
getType() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
getType(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
getType(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
getTypeID() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
getTypeID() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
getTypeID() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
getTypeID() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
getTypeInstance() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
getTypeInstance() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
getTypeInstance() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
getTypeInstance() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
getUIDDoc() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
getUnderlyingText(Node, String) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Returns a concatenated string of all text nodes under this node - not only its children's text nodes.
getUpper() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns the upper bound indicating the maximum occurence of the ConstructScheme.
getURI() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
getURL() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the URL of the database to which the access method connects.
getUsername() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the username used for connecting to the database.
getValue() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Returns the name/value of the schema object.
getValue() - Method in class uk.ac.ic.doc.automed.ssd.Pattern
 
getValue() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
getValue() - Method in class uk.ac.ic.doc.automed.templates.TemplateArgument
Returns this TemplateArgument's value field.
getValue() - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgument
Returns this RuntimeArgument's value field.
getValue() - Method in class uk.ac.ic.doc.automed.matching.Instance
 
getValueForTemplateArgument(int, int, String, String[], HashMap) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns the value for a template argument.
getValueForTemplateArgumentPointingToArgId(int, int, String, String[], HashMap, Vector, boolean) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
.
getValuePosInScheme() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the position in the construct's scheme where the construct's name is, i.e.
getValuesDisplaying() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
getVertexComponent(Positionable) - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 
getVertexComponent(Positionable) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
Get a JComponent that is the visualisation of a class that implements the Positionable interface
getVertexDrawable() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns the name of the class implementing drawable that should be used to draw nodal elements of this construct.
getVertexDrawable(Positionable) - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 
getVertices() - Method in class uk.ac.ic.doc.automed.reps.HDMEdge
 
getWeakestRelationship(SemanticRelationship[]) - Static method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
getWellformedErrorMsg() - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
getWrapper() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Returns the wrapper used for connecting to the database.
getWrapperSchema() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
getXMLDSS() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
getXPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getXPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getXPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getXPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getXPos() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
getYattaRootNode(Schema) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
getYPos() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
getYPos() - Method in class uk.ac.ic.doc.automed.reps.Network
 
getYPos() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
getYPos() - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
getYPos() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
GraphicSchemaObject - class uk.ac.ic.doc.automed.gui.GraphicSchemaObject.
 
GraphicSchemaObject(GraphicManager, Schema, SchemaObject) - Constructor for class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
Greater - class uk.ac.bbk.dcs.automed.qproc.functions.Greater.
 
Greater() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Greater
 
GreaterEqual - class uk.ac.bbk.dcs.automed.qproc.functions.GreaterEqual.
 
GreaterEqual() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.GreaterEqual
 
GREATERTHAN - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
GREATERTHANEQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
Group - class uk.ac.bbk.dcs.automed.qproc.functions.Group.
 
Group() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Group
 
GroupCompute - class uk.ac.bbk.dcs.automed.qproc.functions.GroupCompute.
 
GroupCompute() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.GroupCompute
 
grouplist(ModifiedArray) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Group
 
Gui - class uk.ac.ic.doc.automed.editor.Gui.
 
Gui.EditorFrame - class uk.ac.ic.doc.automed.editor.Gui.EditorFrame.
A frame inside the main window to represent either All Networks, the contents of a Network (ie a connect set of Schemas), or the contents of a Schema
GUIException - exception uk.ac.ic.doc.automed.gui.GUIException.
The class of exceptions generated by the GUI.
GUIException(String) - Constructor for class uk.ac.ic.doc.automed.gui.GUIException
 
GUIException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.gui.GUIException
 
GUITool - class uk.ac.ic.doc.automed.editor.GUITool.
A GUITool instance provides a window in which as user make interact with the repository.
GUITool() - Constructor for class uk.ac.ic.doc.automed.editor.GUITool
 
GUITool(String) - Constructor for class uk.ac.ic.doc.automed.editor.GUITool
 
GUITool(String, boolean, Object) - Constructor for class uk.ac.ic.doc.automed.editor.GUITool
Create a new window that follows the AutoMed GUITool conventions.

H

handleNonStatementArgument(int, String[], HashMap, Vector, boolean) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Creates an execution argument sequence according to a template argument sequence.
hashCode() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 
hashCode() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
hasObject(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.Schema
Determines if the schema contains the given schema object.
hasTextNodes(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
 
hdm_constraint - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
hdm_edge - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
hdm_node - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
hdm_none - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
hdm_reference - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
HDM_TYPE_C - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to a constraint sentence in HDM
HDM_TYPE_E - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to edge name in HDM when instantiating the containing construct, this scheme position takes the name of the new edge to be created in HDM
HDM_TYPE_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
HDM_TYPE_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
HDM_TYPE_N - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to node name in HDM.
HDM_TYPE_N1 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_N2 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_P1 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_P2 - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated.  
HDM_TYPE_R - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme relates to node or edge name/s in HDM and to other Construct/s in the automed.reps API.
HDM_TYPE_Z - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme has no HDM representation
HDMConstraint - class uk.ac.ic.doc.automed.reps.HDMConstraint.
 
HDMConstraint() - Constructor for class uk.ac.ic.doc.automed.reps.HDMConstraint
 
HDMConstraint(String) - Constructor for class uk.ac.ic.doc.automed.reps.HDMConstraint
 
HDMEdge - class uk.ac.ic.doc.automed.reps.HDMEdge.
 
HDMEdge() - Constructor for class uk.ac.ic.doc.automed.reps.HDMEdge
 
HDMEdge(String) - Constructor for class uk.ac.ic.doc.automed.reps.HDMEdge
 
HDMEdge(String, HDMElement[]) - Constructor for class uk.ac.ic.doc.automed.reps.HDMEdge
 
HDMElement - class uk.ac.ic.doc.automed.reps.HDMElement.
 
HDMElement() - Constructor for class uk.ac.ic.doc.automed.reps.HDMElement
 
HDMElement(String) - Constructor for class uk.ac.ic.doc.automed.reps.HDMElement
 
HDMNetwork - class uk.ac.ic.doc.automed.reps.HDMNetwork.
 
HDMNetwork() - Constructor for class uk.ac.ic.doc.automed.reps.HDMNetwork
 
HDMNode - class uk.ac.ic.doc.automed.reps.HDMNode.
 
HDMNode() - Constructor for class uk.ac.ic.doc.automed.reps.HDMNode
 
HDMNode(String) - Constructor for class uk.ac.ic.doc.automed.reps.HDMNode
 
HdmStore - class uk.ac.bbk.dcs.automed.hdmstore.HdmStore.
A HdmStore allows data to be stored and queried in an HDM repository which is implemented in a Postgres databas).
HdmStore() - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Default constructor assumes only error messages should be displayed (not debugs)
HdmStore(Debug) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Constructor is passed debug class to send debug & error messages to
HdmStoreCmd - class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd.
A command line processor for the HDM store which can be used as an alternative to the API..
HdmStoreCmd(String[]) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
Construct a HdmStoreCmd and process the command line arguments
HdmStoreException - exception uk.ac.bbk.dcs.automed.hdmstore.HdmStoreException.
The class of exceptions generated by DataSourceRepository.
HdmStoreException(String) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreException
 
hdmStoreExists(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Is there an HDM store with the passed name in the repository?
HdmWrapper - class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper.
A Wrapper for the HDM data store.
HdmWrapper() - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
 
HdmWrapperFactory - class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory.
 
HdmWrapperFactory() - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
helpGetCurrentModel - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
helpHelp - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
helpSyntax - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
hid() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the hid
hid(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given an HDM store name return its row id number (or -1 if it does not exist)
hidden - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM
 
hide() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM
 
hideInternalSeperators(String) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
Remove commas that are not at the 'top level' e.g.
hideInternalSpaces(String) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
Change any spaces within an edge thats a span to another character
highlighted - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
highlightElseDisableObjectsWithCID(int) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
highlightElseDisableObjectsWithCID(int) - Method in interface uk.ac.ic.doc.automed.templates.gui.InteractiveSchemaDisplay
 
highlightObjectsWithCID(int) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
HORIZONTAL_EXT - Static variable in class uk.ac.ic.doc.automed.gui.Rhombus
 
HOUR - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one hour
hyphen - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 

I

Id - class uk.ac.bbk.dcs.automed.qproc.functions.Id.
 
id() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the id
Id() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Id
 
ident - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
identifier - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
IDENTIFIER_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
identifierSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
identifySubGraphs() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
Discovers the subGraphs in the graph
IdentToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
If - class uk.ac.bbk.dcs.automed.qproc.functions.If.
 
If() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.If
 
ifStack - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
IllegalOperationException - exception uk.ac.ic.doc.automed.reps.IllegalOperationException.
 
IllegalOperationException(String) - Constructor for class uk.ac.ic.doc.automed.reps.IllegalOperationException
 
implementCompositeTransformation(InteractiveSchemaDisplay, Frame) - Static method in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
implementCompositeTransformation(int, InteractiveSchemaDisplay, Frame) - Static method in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
importConstructs(InputStream) - Method in class uk.ac.ic.doc.automed.reps.Model
 
importSchemaObjects(InputStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
importSchemes(InputStream) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
importTransformations(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
importTransformations(InputStream, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
In - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
IN_ROW - Static variable in class uk.ac.ic.doc.automed.gui.SchemaManager
 
IN(TemplateCompilerSimulator.CONSTRAINTS) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
IN(TemplateCompilerSimulator.CONSTRAINTSLIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
IN(TemplateCompilerSimulator.FUNCTION) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
IN(TemplateCompilerSimulator.FUNCTIONLIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
IN(TemplateCompilerSimulator.NAMELIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
IN(TemplateCompilerSimulator.OBJECTLIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
Incompatibility - class uk.ac.ic.doc.automed.matching.relationships.Incompatibility.
 
inconsistent - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
InconsistentException - exception uk.ac.ic.doc.automed.InconsistentException.
A manipulation of the repository that should always succeed has failed.
InconsistentException(String) - Constructor for class uk.ac.ic.doc.automed.InconsistentException
Creates an InconsistentException when there has been no Exception that caused the error to discovered.
InconsistentException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.InconsistentException
Creates an InconsistentException when it is acting as a wrapper for other Exceptions.
INDEX - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model SQL Indexes in any Schema the factory generates
INDEX_LIST_STATEMENT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
IndexListStatement - class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement.
 
IndexListStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
indexOf(Schema) - Method in class uk.ac.ic.doc.automed.reps.Pathway
Returns the index of a given Schema within the pathway.
init_actions() - Method in class uk.ac.bbk.dcs.automed.qproc.EnvParser
Action encapsulation object initializer.
init_actions() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Action encapsulation object initializer.
initialise() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
initialiseArguments() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
initialiseToolbars() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
initialSchemaKey - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
inputData(int, String) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
inputData(String, String) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
InputForm - class uk.ac.ic.doc.automed.templates.gui.InputForm.
 
InputForm(boolean, boolean) - Constructor for class uk.ac.ic.doc.automed.templates.gui.InputForm
 
InputForm(int, boolean) - Constructor for class uk.ac.ic.doc.automed.templates.gui.InputForm
 
InputForm(TTemplateInputArgument) - Constructor for class uk.ac.ic.doc.automed.templates.gui.InputForm
 
inputObjectToTemplate(int, String) - Method in class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
inputObjectToTemplate(int, String) - Method in interface uk.ac.ic.doc.automed.templates.gui.DialogueManager
 
inputs - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
INPUTS() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
 
INPUTS() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
inputVariables - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
inRange(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Determine if a certain number of instances of elements in a scheme matching this ConstructScheme are permissable.
InsertingStatement - class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement.
 
InsertingStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
insertIQL(ASG) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Execute an IQL insert on the datasource.
insertIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
insertIQL(ASG) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Take the query and attempt to insert each of the values in the list into the database.
INSIDE - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
Instance - class uk.ac.ic.doc.automed.matching.Instance.
 
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Superset
 
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Subset
 
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
INSTANCE - Static variable in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
Instance() - Constructor for class uk.ac.ic.doc.automed.matching.Instance
 
Instance(String, int) - Constructor for class uk.ac.ic.doc.automed.matching.Instance
 
INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Token to represent the AutoMedWrapper.INTEGER atomic type
INTEGER - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a twos-complement integer atomic type
INTEGER_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
IntegrateDialog - class uk.ac.ic.doc.automed.gui.IntegrateDialog.
A dialog that can be used for schema integration by name.
IntegrateDialog(Frame, String, boolean) - Constructor for class uk.ac.ic.doc.automed.gui.IntegrateDialog
 
integrateSchemas(Schema, Schema) - Static method in class uk.ac.ic.doc.automed.gui.IntegrateDialog
 
Integrator - class uk.ac.ic.doc.automed.matching.Integrator.
 
Integrator() - Constructor for class uk.ac.ic.doc.automed.matching.Integrator
 
IntegratorException - exception uk.ac.ic.doc.automed.matching.IntegratorException.
 
IntegratorException() - Constructor for class uk.ac.ic.doc.automed.matching.IntegratorException
 
IntegratorException(String) - Constructor for class uk.ac.ic.doc.automed.matching.IntegratorException
 
IntegratorException(String, Throwable) - Constructor for class uk.ac.ic.doc.automed.matching.IntegratorException
 
IntegratorException(Throwable) - Constructor for class uk.ac.ic.doc.automed.matching.IntegratorException
 
IntegrityException - exception uk.ac.ic.doc.automed.IntegrityException.
An attempt has be made to alter the repository (or data structure representing it) in a way that would make it inconsistent.
IntegrityException(String, String, int, int) - Constructor for class uk.ac.ic.doc.automed.IntegrityException
Creates an IntegrityException, recording details of what operation was being attempted
IntegrityException(String, String, int, int, int) - Constructor for class uk.ac.ic.doc.automed.IntegrityException
Creates an IntegrityException, recording details of what operation was being attempted
InteractiveSchemaDisplay - interface uk.ac.ic.doc.automed.templates.gui.InteractiveSchemaDisplay.
 
intersectionByName(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an SchemaObject array containing the intersection by name between this schema (s1) and the schema passed as a parameter (s2).
intValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the value of this AutoMedInteger as an int
INVALID_TYPE - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
InvalidElementException - exception uk.ac.ic.doc.automed.matching.InvalidElementException.
 
InvalidElementException() - Constructor for class uk.ac.ic.doc.automed.matching.InvalidElementException
 
InvalidElementException(String) - Constructor for class uk.ac.ic.doc.automed.matching.InvalidElementException
 
InvalidElementException(String, Throwable) - Constructor for class uk.ac.ic.doc.automed.matching.InvalidElementException
 
INVOCATION_STATEMENT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Statement to inve other template transformations
invoke(RuntimeArgumentSequence) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Invokes this CompositeTransformation with the specified RuntimeArgumentSequence as arguments.
IQLfromResult(AutoMedResult) - Method in class uk.ac.bbk.dcs.automed.wrappers.Translator
 
IQLfromResult(AutoMedResult) - Method in class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator
 
IS(Construct) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRUCT
 
IS(Object[]) - Static method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.SCHEME
 
IS(String) - Static method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS
 
IS(String) - Static method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION
 
IS(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRUCT
 
IS(TemplateCompilerSimulator.CONSTRAINTS) - Static method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS
 
IS(TemplateCompilerSimulator.FUNCTION) - Static method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION
 
isAdjacent(Node) - Method in class uk.ac.ic.doc.automed.reps.Node
 
isApply() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is apply
isArgument - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS
 
isArgument - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION
 
isAtomic() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
isBeingDisplayed() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
isChangedRefTML() - Method in class uk.ac.ic.doc.automed.tml.TML
 
isComplete() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
isConsConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is "Cons"
isConstant() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is constant
isConstraints() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
isConstraints() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
isConstraints() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
isConstraints() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
isConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is constructor
isConstructRoot(int) - Static method in class uk.ac.ic.doc.automed.MDR
 
isConstructSchemeKey(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
isCyclic() - Method in class uk.ac.ic.doc.automed.reps.Network
 
isDataSource() - Method in class uk.ac.ic.doc.automed.reps.Schema
Determines whether or not the schema represents an external data source.
isDependentOn(Transformation) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Determines whether or not the transformation is dependent on another transformation.
isDirected() - Method in class uk.ac.ic.doc.automed.reps.Network
 
isElementNode(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Returns true if node n is an element node, false otherwise
isEmpty() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Tests if this program is empty.
isEnabled() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
isExecuted() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns false if the specified transformation is not currently being executed, true otherwise.
isExtDB() - Method in class uk.ac.ic.doc.automed.reps.Schema
Determines whether or not the schema represents an extentional database.
isExtSchema() - Method in class uk.ac.ic.doc.automed.reps.Schema
Determines whether or not the schema is an extentional schema.
isFeatureInUse(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Test if a certain group of features is being implemented in the representation of the datasource model in the AutoMed repository
isFunction() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is function
isFunction() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
isFunction() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
isFunction() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
isFunction() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
isHidden() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM
 
isHighlighted() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
isInRepository() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
isKey - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
isKey() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Determine if this Scheme is part of the set of Schemes that uniquely identify the parent SchemaObject in a particular Schema
isKey() - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Returns whether of not the ConstructScheme is part the key of the whole scheme.
isLambda() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is lambda
isLeaf() - Method in class uk.ac.ic.doc.automed.reps.Node
True if (and only if) this node belongs to a directed network and this is a leaf node.
isLeaf() - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 
isList() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
isList() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
isList() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
isList() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
isName() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
isName() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
isName() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
isName() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
isNaN() - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
isNew() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
isNewTemplate - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
isNilConstructor() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is "Nil"
isNode() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Is this Span a node?
isNull() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Is this type a null value?
isNum() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if the Cell contains a double
isObject() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
isObject() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
isObject() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
isObject() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
isOutput() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
isPrimaryKeyForeignKey() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
isPrimaryKeyForeignKey(Schema, SchemaObject) - Static method in class uk.ac.ic.doc.automed.reps.Utility
Returns whether a foreign-key field SchemaObject is also a primary-key.
isRedundant(Transformation) - Method in class uk.ac.ic.doc.automed.reps.Transformation
Determines whether or not the transformation and the given tran are redundant, e.g., two transformations are redundant if they transform the same schema object and their action is the opposite of the other (add/delete, extend/contract, etc.).
isRelated(SchemaObject, SchemaObject[], SemanticRelationship, boolean) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
isReturn - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
isRoot - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
isRoot() - Method in class uk.ac.ic.doc.automed.reps.Node
True if (and only if) this node belongs to a directed network and this is a root node.
isRoot() - Method in class uk.ac.ic.doc.automed.reps.Construct
Returns whether or not the construct is a construct of its underlying model.
isRoot() - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
 
isSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
isSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
isSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
isSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
isSchemaDataSource(int) - Static method in class uk.ac.ic.doc.automed.STR
Determines whether or not the specified schema represents a data source.
isSchemaExtDB(int) - Static method in class uk.ac.ic.doc.automed.STR
Determines whether or not the specified schema represents an extensional database.
isSchemaExtSchema(int) - Static method in class uk.ac.ic.doc.automed.STR
Determines whether or not the specified schema is an extensional schema.
isScheme() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is scheme
isSet() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
isSpecial() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is special
isString - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS
 
isString - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION
 
isString() - Method in class uk.ac.ic.doc.automed.reps.Scheme
Determine if this Scheme defines a String, rather than a reference to some other SchemaObject
isString() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
isString() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
isString() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
isString() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
isStronger(SemanticRelationship) - Method in class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
 
isSysVariable() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is sysvariable
isTempARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
isTextNode(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Returns true if node n is a text node, false otherwise
isTree() - Method in class uk.ac.ic.doc.automed.reps.Network
 
isUndefined() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformationRecord
 
isValidMethId(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
This method determines if a method with the specified meth_id exists in the SMR.
isValidStId(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
This method determines if a statement with the specified st_id exists in the TTSR.
isValidTransId(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
This method determines if a composite transformation with the specified trans_id exists in the TTR.
isVariable() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is variable
isWellformed() - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
isYattaModelandSource(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
itemGotFocus(InputItem) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
itemPosition(InputItem) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 

J

JSomClusterer - class uk.ac.ic.doc.automed.matching.modules.JSomClusterer.
 
JSomClusterer(ElementVectorRepresentation[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.JSomClusterer
 
JSomClusterer(int) - Constructor for class uk.ac.ic.doc.automed.matching.modules.JSomClusterer
 
justDragged - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 

K

keywords - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 

L

l() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns a reference to the left child of the Cell
lambda - Static variable in class uk.ac.bbk.dcs.automed.qproc.Cell
 
Lambda - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
Lambda - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
LArrow - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
LAST - Static variable in class uk.ac.ic.doc.automed.editor.MatchingTool
 
lastArgumentPosition - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
lastCharKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
lastConstructKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
lastKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
lastModelKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
lastSchema - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
lastSchemaKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
lastSchemeKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
lastTransformationKeyword - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
layDownAllInputItems() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
layoutContainer(Container) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
LCB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
LDAB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
LDAB - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
LEFT_ARROW_ICON - Static variable in class uk.ac.ic.doc.automed.templates.gui.Accessories
 
leftBrace - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
leftBracket - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
Less - class uk.ac.bbk.dcs.automed.qproc.functions.Less.
 
Less() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Less
 
LessEqual - class uk.ac.bbk.dcs.automed.qproc.functions.LessEqual.
 
LessEqual() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.LessEqual
 
LESSTHAN - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
LESSTHANEQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
Let - class uk.ac.bbk.dcs.automed.qproc.functions.Let.
 
Let - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
Let() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Let
 
line - Variable in class uk.ac.ic.doc.automed.editor.GUITool
 
Line - class uk.ac.ic.doc.automed.gui.Line.
 
Line() - Constructor for class uk.ac.ic.doc.automed.gui.Line
 
link - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
link_nodal - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
list - Variable in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
LIST - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
LIST_ICON - Static variable in class uk.ac.ic.doc.automed.templates.gui.Accessories
 
LIST_SCHEMA_LONG - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Constant used to indicate where schemes in schemas must be listed with all details, including the OBID as returned by SchemaObject.getOBID() SchemaObject}, and the Construct as returned by SchemaObject.getConstruct().
LIST_SCHEMA_NORMAL - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Constant used to indicate where schemes in schemas must be listed with all the type of each SchemaObject prefixing the scheme of each object.
LIST_SCHEMA_SHORT - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Constant used to indicate where schemes in schemas must be listed with the minimum of detail.
LIST_TYPE - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
listArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
listNodes() - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Want to display all the nodes so pass just a wildcard as a the pattern
listNodes(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
List the instance nodes of the passed nodeType (or wildcard)
listOfSchemes() - Method in class uk.ac.bbk.dcs.automed.qproc.ASG
Returns a list of the schemes used in the ASG as String objects.
listOfSchemes(ASG) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
Returns a list of the schemes used in the ASG as String objects.
listSchema() - Method in class uk.ac.ic.doc.automed.reps.Schema
List the Schema to the current output in a form designed for human interpretation.
listSchema(PrintStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
Shorthand for calling listSchema(out,LIST_SCHEMA_NORMAL)
listSchema(PrintStream, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
Shorthand for calling listSchema(out,LIST_SCHEMA_NORMAL,false)
listSchema(PrintStream, int, boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
List the Schema to an output stream, using the specified format.
listSchemaHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
listSchemaSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
listScroller - Variable in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
listTransformationPathway() - Method in class uk.ac.bbk.dcs.automed.xml.XMLTransformer
Prints out the transformation pathway created by the schema transformation algorithm.
load(Schema) - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
Loads the schema specified into this SchemaManager.
loadBrowseWindow() - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
LoadDialog - class uk.ac.ic.doc.automed.gui.LoadDialog.
 
LoadDialog - class uk.ac.ic.doc.automed.templates.gui.LoadDialog.
 
LoadDialog(Frame, String, boolean) - Constructor for class uk.ac.ic.doc.automed.gui.LoadDialog
 
LoadDialog(Frame, String, boolean) - Constructor for class uk.ac.ic.doc.automed.templates.gui.LoadDialog
 
loadedSchemas - Variable in class uk.ac.ic.doc.automed.templates.gui.SchemaFrame
 
LoadListFromFile - class uk.ac.bbk.dcs.automed.qproc.functions.LoadListFromFile.
 
LoadListFromFile() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.LoadListFromFile
 
loadPatternWindow(String) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
loadSchema(int) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
loadSchema(int) - Method in interface uk.ac.ic.doc.automed.templates.gui.InteractiveSchemaDisplay
 
loadSchema(Schema) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
LONG_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
longValue() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the value of this AutoMedInteger as an long
loopStatementsStack - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
lowerBound - Static variable in class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
 
LowLevelWrapperHdm - class uk.ac.bbk.dcs.automed.hdmstore.LowLevelWrapperHdm.
The LowLevelWrapperHdm passes queries to the HdmStore and returns the results in the HDM specifc format of a Linked List of EdgeElements each representing a tuple.
LowLevelWrapperHdm(HdmStore) - Constructor for class uk.ac.bbk.dcs.automed.hdmstore.LowLevelWrapperHdm
The constructor is passed the HdmStore to be used
LRB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
LRB - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
LSB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 

M

main(String[]) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.DSR
Provides a simple command line interface to enable the configuration file to be checked.
main(String[]) - Static method in class uk.ac.ic.doc.automed.MDR
Executing this class invokes this method which supplies a command line interface to the MDR.
main(String[]) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.STR
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.SSMDR
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.STRMethodTest
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.editor.Editor
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.gui.SchemaTool
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.templates.gui.SchemaFrame
 
main(String[]) - Static method in class uk.ac.ic.doc.automed.templates.gui.Run
 
main(String[]) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
main creates an HdmStoreCmd and passes the arguments
mainPanel - Variable in class uk.ac.ic.doc.automed.templates.gui.SchemaFrame
 
mainTemplate - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
makeIdentifierSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
makeQuery(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
 
makeStringSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
makeUpdate(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
 
Map - class uk.ac.bbk.dcs.automed.qproc.functions.Map.
 
Map() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Map
 
MapDisplay - class uk.ac.ic.doc.automed.matching.modules.MapDisplay.
 
MapDisplay(Map, Vectors) - Constructor for class uk.ac.ic.doc.automed.matching.modules.MapDisplay
Creates new form MapDisplay
match(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return a array of two Schemas, which are formed by extending two conformed schemes such that they are identical.
MatchingTool - class uk.ac.ic.doc.automed.editor.MatchingTool.
 
MatchingTool(Schema, Schema) - Constructor for class uk.ac.ic.doc.automed.editor.MatchingTool
 
materialiseSchema(Document) - Method in class uk.ac.bbk.dcs.automed.xml.DOMMaterialiser
 
Max - class uk.ac.bbk.dcs.automed.qproc.functions.Max.
 
MAX_CHARS - Static variable in class uk.ac.ic.doc.automed.matching.modules.StatisticsModule
 
Max() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Max
 
MDR - class uk.ac.ic.doc.automed.MDR.
Properties used from the MDR data source
MDR_DataSourceName - Static variable in class uk.ac.ic.doc.automed.MDR
 
MDR() - Constructor for class uk.ac.ic.doc.automed.MDR
 
MDRException - exception uk.ac.ic.doc.automed.MDRException.
The class of exceptions generated by MDR.
MDRException(String) - Constructor for class uk.ac.ic.doc.automed.MDRException
 
Member - class uk.ac.bbk.dcs.automed.qproc.functions.Member.
 
Member() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Member
 
merge(Hashtable, Hashtable) - Static method in class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
 
mergeSchemas() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
mergeSchemas() - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
METHOD_PREFIX - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
A character that prefixes the method calls in the DEFINE_STRING statement.
METHOD_PREFIX - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
mimicThisCell(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns an exact copy of the input Cell
Min - class uk.ac.bbk.dcs.automed.qproc.functions.Min.
 
Min() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Min
 
minimumLayoutSize(Container) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
Minus - class uk.ac.bbk.dcs.automed.qproc.functions.Minus.
 
Minus() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Minus
 
MINUTE - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one minute
model - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
model - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
Model - class uk.ac.ic.doc.automed.reps.Model.
The Model class
ModelDefinitionsRepository - class uk.ac.ic.doc.automed.ModelDefinitionsRepository.
 
ModelDefinitionsRepository() - Constructor for class uk.ac.ic.doc.automed.ModelDefinitionsRepository
 
ModelDefinitionsRepositoryException - exception uk.ac.ic.doc.automed.ModelDefinitionsRepositoryException.
 
ModelDefinitionsRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.ModelDefinitionsRepositoryException
 
ModelingProgram - class uk.ac.ic.doc.automed.reps.ModelingProgram.
Class representing the graphical representation of a Construct.
ModelingProgram() - Constructor for class uk.ac.ic.doc.automed.reps.ModelingProgram
Constructs a new, empty ModelingProgram
ModelingStatement - class uk.ac.ic.doc.automed.reps.ModelingStatement.
Class that defines the statement/method-call that can be used in a construct's graphical representation.
ModelingStatement(String) - Constructor for class uk.ac.ic.doc.automed.reps.ModelingStatement
Constructs a new ModelingStatement.
modelName - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
 
ModifiedArray - class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray.
 
ModifiedArray() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
ModifiedArray(Cell) - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
Monus - class uk.ac.bbk.dcs.automed.qproc.functions.Monus.
 
Monus() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Monus
 
monus(ModifiedArray, ModifiedArray) - Static method in class uk.ac.bbk.dcs.automed.qproc.functions.Utilities
 
mouseClicked(MouseEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
mouseClicked(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mouseDragged(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mouseEntered(MouseEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
mouseEntered(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mouseExited(MouseEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
mouseExited(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mouseMoved(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mousePressed(MouseEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
mousePressed(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
mouseReleased(MouseEvent) - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
mouseReleased(MouseEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
msg(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Debug
Write a normal level message
msg(String, int) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Debug
Write a message, severity level is a parameter
MULTI - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
Multiply - class uk.ac.bbk.dcs.automed.qproc.functions.Multiply.
 
Multiply() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Multiply
 
multiply(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the multiplication of two AutoMedFloats.
multiply(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the multiplication of two AutoMedIntegers.
multiply(BidirectionalDegree) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
my(TemplateCompilerSimulator.NAME) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
myArgument - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM
 
myCompiler - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM
 
mySchemaObject - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
myStatements - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
myTrans - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
myType - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 

N

NaiveBayesModule - class uk.ac.ic.doc.automed.matching.modules.NaiveBayesModule.
 
NaiveBayesModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.NaiveBayesModule
 
name - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
NAME - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
NAME - Variable in class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 
NAME - Variable in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
NAME - Variable in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
NAME - Variable in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
NAME - Variable in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
name() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
Get the edge name
nameDimensions - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
names - Variable in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
nestList - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
Network - class uk.ac.ic.doc.automed.reps.Network.
 
NETWORK_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
NETWORK_MERGED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
NETWORK_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
NETWORK_SPLIT - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
Network(Schema[][]) - Constructor for class uk.ac.ic.doc.automed.reps.Network
Constructs a directed network from the schema paths supplied.
Network(String, Schema[][]) - Constructor for class uk.ac.ic.doc.automed.reps.Network
Constructs a directed network from the schema paths supplied.
Network(String, Schema[][], boolean, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.Network
Constructs a network from the schema paths supplied.
networkAdded(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworksListener
 
networkAdded(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
NetworkChangeEvent - class uk.ac.ic.doc.automed.reps.NetworkChangeEvent.
 
NetworkChangeEvent(int, Object) - Constructor for class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
NetworkChangeListener - interface uk.ac.ic.doc.automed.reps.NetworkChangeListener.
 
networkMerged(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
networkMerged(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
networkRemoved(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
networkRemoved(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworksListener
 
networkRemoved(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
NetworksListener - interface uk.ac.ic.doc.automed.reps.NetworksListener.
 
networkSplit(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
networkSplit(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
NEW_OBJECT_STATEMENT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Statement to create new objects
NEW_SCHEMA_Y_OFFSET - Static variable in class uk.ac.ic.doc.automed.reps.Schema
Default distance to place a new schema created by a transformation from the schema it is created from
newapplyExtendTransformation(Construct, String, String, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
newAutoMedSchema(String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Returns the Schema that represents in the datasource in terms of SchemaObjects in an AutoMed oriented manner.
newAutoMedWrapper(AccessMethod) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Deprecated. use getAutoMedWrapper(am) instead
newAutoMedWrapper(AccessMethod, String) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Deprecated. use getAutoMedWrapper
newAutoMedWrapper(String, String, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapper
Create an AutoMed Schema containing SchemaObjects that represent a database, in such a form that queries on that schema can be mapped by executeQuery in the query lanuage of the database.
newAutoMedWrapper(String, String, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.ic.doc.automed.wrappers.OracleWrapper
Create an AutoMed Schema containing SchemaObjects that represent a database, in such a form that queries on that schema can be mapped by executeQuery in the query lanuage of the database.
newAutoMedWrapper(String, String, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.ic.doc.automed.wrappers.PostgresWrapper
Create an AutoMed Schema containing SchemaObjects that represent a database, in such a form that queries on that schema can be mapped by executeQuery in the query lanuage of the database.
newAutoMedWrapper(String, String, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
Create an AutoMed Schema containing SchemaObjects that represent a database, in such a form that queries on that schema can be mapped by executeQuery in the query lanuage of the database.
newAutoMedWrapper(String, String, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
newAutoMedWrapper(String, String, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapper
 
newInconsistentException(String, Exception) - Static method in class uk.ac.ic.doc.automed.InconsistentException
Create a new InconsistentException only if necessary.
newInput(TemplateCompilerSimulator.ITEM) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
newNameARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
newObjectArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
newScope() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
 
next_token() - Method in class uk.ac.bbk.dcs.automed.qproc.EnvLexer
 
next_token() - Method in class uk.ac.bbk.dcs.automed.qproc.QLexer
 
next_token() - Method in class uk.ac.bbk.dcs.automed.qproc.FLexer
 
next() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Returns true if the cursor can be moved to a next row
nextStatement(TStatement) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
NilOptimiser - class uk.ac.bbk.dcs.automed.qproc.optimise.NilOptimiser.
 
NilOptimiser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.NilOptimiser
 
NO_EXT - Static variable in class uk.ac.ic.doc.automed.gui.Rhombus
 
nodal - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
Node - class uk.ac.ic.doc.automed.reps.Node.
 
NODE_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
NODE_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.NetworkChangeEvent
 
node() - Method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
is this element a node?
nodeAdded(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
nodeAdded(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
nodeExists(Span) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
For the node instance specifed in the Span data structure check if it exists in the HDM store
nodeExists(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
For the node instance specifed by node type & value, check if it exists in the HDM store
nodeRemoved(NetworkChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.NetworkChangeListener
 
nodeRemoved(NetworkChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
nodeSpan - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
 
nodeTypeExists(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Check whether any instances of this node type are currently stored in the HDM store
NodeUtility - class uk.ac.bbk.dcs.automed.xml.NodeUtility.
Implements useful operation on nodes.
NodeUtility() - Constructor for class uk.ac.bbk.dcs.automed.xml.NodeUtility
 
nodeValue() - Method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
get the nodeValue
NONE - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.Debug
 
NONSCALAR_COMPOUND_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
NORMAL - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.Debug
 
Not - class uk.ac.bbk.dcs.automed.qproc.functions.Not.
 
NOT - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
NOT_EQUAL - Static variable in class uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort comparison where .
Not() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Not
 
NotEqual - class uk.ac.bbk.dcs.automed.qproc.functions.NotEqual.
 
NOTEQUAL - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
NotEqual() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.NotEqual
 
NotFoundException - exception uk.ac.ic.doc.automed.NotFoundException.
A request has be made for details of an object where the object is not present in the repository
NotFoundException(String) - Constructor for class uk.ac.ic.doc.automed.NotFoundException
Creates an NotFoundException when there has been no Exception that caused the error to discovered.
NotFoundException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.NotFoundException
Creates an NotFoundException when it is acting as a wrapper for other Exceptions.
NotImplementedException - exception uk.ac.ic.doc.automed.NotImplementedException.
Some part of the AutoMed code that should present has not yet been implemented..
NotImplementedException() - Constructor for class uk.ac.ic.doc.automed.NotImplementedException
Creates an NotImplementedException with no message
NotImplementedException(String) - Constructor for class uk.ac.ic.doc.automed.NotImplementedException
Creates an NotImplementedException detailing what has not been implemented! .
NotOptimisableException - exception uk.ac.ic.doc.automed.tml.NotOptimisableException.
A request for optimisatiing a pathway has been made where the pathway is not optimisable
NotOptimisableException(String) - Constructor for class uk.ac.ic.doc.automed.tml.NotOptimisableException
Creates an NotOptimisableException when there has been no Exception that caused the error to discovered.
NotOptimisableException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.tml.NotOptimisableException
Creates an NotOptimisableException when it is acting as a wrapper for other Exceptions.
nul - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
NULL_CONSTRAINT - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model the null/notnull distinction as part of a column in any Schema the factory generates
NULL_STR - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
String to use to represent null values
nullAction(Object[]) - Static method in class uk.ac.ic.doc.automed.editor.Gui
 
number - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
NumberInstancesModule - class uk.ac.ic.doc.automed.matching.modules.NumberInstancesModule.
 
NumberInstancesModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.NumberInstancesModule
 
numberOfElements() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
numberOfElements() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
numberOfElements() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
numberOfElements() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
numberOfElements(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
numberOfElements(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
numberOfElements(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
numberOfElements(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
numberOfElements(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
numberOfElements(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
numberOfElements(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
numberOfElements(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
numberOfElements(TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
numberOfReturns - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
numberOfRowsInResultSet(ResultSet) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given a result set - how many rows are in it?
numOfInstances() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
NumToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
nval - Variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 

O

obid - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
OBJECT - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
OBJECT_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
OBJECT_CHANGED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
OBJECT_HDISTANCE - Static variable in class uk.ac.ic.doc.automed.gui.SchemaManager
 
OBJECT_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
OBJECT_VDISTANCE - Static variable in class uk.ac.ic.doc.automed.gui.SchemaManager
 
objectAdded(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
objectAdded(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
objectChanged(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
objectChanged(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
objectClicked(int, String) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
objectMovedAt(DrawingObject, int, int) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
objectRemoved(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
objectRemoved(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
okButton - Variable in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
okToAddEdge(Edge) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given an Edge is it OK to add the edge e.g.
oldRetract() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
openScheme - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
optimise() - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
optimise(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.NilOptimiser
 
optimise(ASG) - Method in interface uk.ac.bbk.dcs.automed.qproc.optimise.Optimiser
 
optimise(boolean) - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
optimise(boolean, PathwayOptimiserTool) - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
optimise(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.optimise.NilOptimiser
 
optimise(Cell) - Method in interface uk.ac.bbk.dcs.automed.qproc.optimise.Optimiser
 
optimisePathway(Pathway) - Static method in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 
optimisePathway(Pathway, boolean) - Static method in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 
optimisePathway(Pathway, boolean, PathwayOptimiserTool) - Static method in class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 
Optimiser - interface uk.ac.bbk.dcs.automed.qproc.optimise.Optimiser.
 
OPTION_SCHEMA_NAME - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapper
An option key setting, the value of which should be the SQL schema which is the only one to be mapped in this wrapping
OPTIONAL - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
OpToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
Or - class uk.ac.bbk.dcs.automed.qproc.functions.Or.
 
OR - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
SQL logical OR binary operator for use within WHERE expressions
Or() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Or
 
OracleWrapper - class uk.ac.ic.doc.automed.wrappers.OracleWrapper.
A lower level wrapper for the conforming to the AutoMed SQL high level wrapper for Oracle SQL databases.
OracleWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.OracleWrapper
Generate a new wrapper instance from information held in the repository about how to access a data source.
OracleWrapperFactory - class uk.ac.ic.doc.automed.wrappers.OracleWrapperFactory.
A lower level wrapper factory for Oracle SQL databases conforming to the AutoMed SQL high level wrapper factory.
OracleWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.OracleWrapperFactory
 
outerMostVariables - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
outputs - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
overFunction(double) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
Overlapness - class uk.ac.ic.doc.automed.matching.relationships.Overlapness.
 
overlaps - Variable in class uk.ac.ic.doc.automed.matching.Integrator
 
owner - Variable in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 

P

p - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
The underlying Positionable that this Drawable instace is representing
p - Variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
paint(Graphics) - Method in class uk.ac.ic.doc.automed.gui.ToolTip
 
paint(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkArc
Modify the basic drawing of arcs to set the arc colour based on the foreground colour of the first positionable connected
paint(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalArc
Choose the colour to be that which the first connected Positionable is drawn in
paint(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
 
paint(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DrawArc
 
paint(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintArc
 
paint(Graphics2D) - Method in interface uk.ac.ic.doc.automed.editor.Drawable
 
paint(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.YattaDrawSequence
Modify the basic drawing of arcs to set the arc colour based on the foreground colour of the first positionable connected
paint(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.drawables.YattaDrawLinkNodalLink
Draw a Yatta Arc by linking all parents to child
paintArcs(Graphics2D) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
paintChildren(Graphics) - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 
paintChildren(Graphics) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
paintComponent(Graphics) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
paintComponent(Graphics) - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
paintIcon(Component, Graphics, int, int) - Method in class uk.ac.ic.doc.automed.gui.ArrowIcon
 
paintSpecificShapes(Graphics) - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkVertex
 
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
 
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
Draw a circle to represent the attribute vertex
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawNodalVertex
Replace the paintSymbol method of DrawVertex with one that draws a rectangle rather that a oval.
paintSymbol(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawConstraintVertex
Draw a rounded box to represent a constraint
paintText(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
 
paintText(Graphics2D) - Method in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
panelsOfSchemas - Variable in class uk.ac.ic.doc.automed.templates.gui.SchemaFrame
 
parent - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
parentStatement() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
parseFile(String, boolean) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Parses the input file and returns its DOM representation
password - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
PATH - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
path() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
Get the edge value as a path of spans
Pathway - class uk.ac.ic.doc.automed.reps.Pathway.
The Pathway class
PathwayOptimiser - class uk.ac.ic.doc.automed.tml.PathwayOptimiser.
 
PathwayOptimiser() - Constructor for class uk.ac.ic.doc.automed.tml.PathwayOptimiser
 
PathwayOptimiserTool - class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool.
A PathwayOptimiserTool instance provides a dialog box displaying the result of running pathway optimisation on the given pathway.
PathwayOptimiserTool(Schema[]) - Constructor for class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
Pattern - class uk.ac.ic.doc.automed.ssd.Pattern.
The Pattern class represents a pattern of a semistructured datasource in regular expression.
Pattern(int) - Constructor for class uk.ac.ic.doc.automed.ssd.Pattern
 
Pattern(String, String) - Constructor for class uk.ac.ic.doc.automed.ssd.Pattern
 
PatternRule - class uk.ac.bbk.dcs.automed.qproc.optimise.PatternRule.
 
PatternRule(String, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.PatternRule
 
patterns - Variable in class uk.ac.ic.doc.automed.matching.modules.Clusterer
 
patternSize - Variable in class uk.ac.ic.doc.automed.matching.modules.Clusterer
 
PatternWritingTool - class uk.ac.ic.doc.automed.editor.PatternWritingTool.
 
PatternWritingTool.DynamicTree - class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree.
 
PatternWritingTool.DynamicTree() - Constructor for class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
PatternWritingTool(Schema) - Constructor for class uk.ac.ic.doc.automed.editor.PatternWritingTool
 
pcdata - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
perform(Cell[], Evaluator) - Method in interface uk.ac.bbk.dcs.automed.qproc.BuiltInFunction
Returns a Cell object that is the root of a graph that represents the result of applying the built-in function to the arguments args.
perform(Cell[], Evaluator) - Method in class uk.ac.ic.doc.automed.wrappers.ssdfunctions.generateId
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Flatmap
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Foldr
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.BagIntersect
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Monus
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Foldl
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Equals
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Comprehension
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Sort
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.LessEqual
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Minus
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.SortDistinct
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.And
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Not
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Member
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.GreaterEqual
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.SubBag
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.LoadListFromFile
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Count
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Less
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Group
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.CallToWrapper
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Plus
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Sum
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.If
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Multiply
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Id
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Append
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.SetUnion
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Single
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.First
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Let
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Or
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Greater
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Map
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.GroupCompute
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.NotEqual
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Min
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Second
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Difference
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Average
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Divide
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Max
 
perform(Cell[], Evaluator) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.Disjunction
 
PinBoardLayout - class uk.ac.ic.doc.automed.editor.PinBoardLayout.
 
PinBoardLayout(Map, Map) - Constructor for class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
pks - Variable in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
Plus - class uk.ac.bbk.dcs.automed.qproc.functions.Plus.
 
Plus() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Plus
 
populateDatabaseId(char, int) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Populate the id of the span in the database
populateEdgeValue(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Populate specific values for an edge
populateNodeValue(String, String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Populate specific values for a node
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Read the metadata from the wrapper connection, and store in existing Schema within the wrapper.
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
populateSchema(AutoMedWrapper) - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
Read the metadata from the wrapper connection, and store in the Schema and SSDFormat within the wrapper.
populateSchema(AutoMedWrapper) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapperFactory
 
populateSchema(AutoMedWrapper) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.DOMWrapperFactory
 
populateSchema(AutoMedWrapper) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapperFactory
 
POPUP_ICON - Static variable in class uk.ac.ic.doc.automed.templates.gui.Accessories
 
popUpArgumentValues(TTemplateInputArgument[]) - Method in class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
popupSchema(Schema) - Static method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
position - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
Positionable - interface uk.ac.ic.doc.automed.editor.Positionable.
 
PostgresWrapper - class uk.ac.ic.doc.automed.wrappers.PostgresWrapper.
A lower level wrapper for the conforming to the AutoMed SQL high level wrapper for Postgres SQL databases.
PostgresWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.PostgresWrapper
Generate a new wrapper instance from information held in the repository about how to access a data source.
PostgresWrapperFactory - class uk.ac.ic.doc.automed.wrappers.PostgresWrapperFactory.
A lower level wrapper factory for Postgres SQL databases conforming to the AutoMed SQL high level wrapper factory.
PostgresWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.PostgresWrapperFactory
 
PrecisionModule - class uk.ac.ic.doc.automed.matching.modules.PrecisionModule.
 
PrecisionModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.PrecisionModule
 
preferredLayoutSize(Container) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
prefixAllNodalNames(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Create a new Schema which contains the same set of constructs as an existing, except each has been renamed to have a common prefix if it is of Construct type Nodal.
prefixSchemaObjectName(String, SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.Schema
Create a new Schema if the SchemaObject is a Nodal object, where the SchemaObject has had a prefix applied to the node name,
preservesEq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
preservesEquivalence() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Returns whether this CompositeTransformation preserves schema equivalence.
prettyPrint(Node) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Outputs the subtree with root n to System.out with identation, without any respect to the file's original identation
prettyPrint(Node, String) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Outputs the subtree with root n to System.out with identation, without any respect to the file's original identation.
previous() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Returns true if the cursor can be moved back to a previous row
PRIMARY_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model primary keys in any Schema the factory generates
PRIMITIVE_TRANSFORMATION_STATEMENT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Statement to execute primitive transformations
primitiveArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
primitiveArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
primitiveArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
print() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
 
print() - Method in class uk.ac.ic.doc.automed.tml.TempPathway
 
print() - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
 
print() - Method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
 
print() - Method in class uk.ac.ic.doc.automed.templates.TemplateArgument
 
print() - Method in class uk.ac.ic.doc.automed.templates.StatementExecution
 
print() - Method in class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
 
print() - Method in class uk.ac.ic.doc.automed.templates.Statement
 
print() - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
 
print() - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgument
 
print() - Method in class uk.ac.ic.doc.automed.matching.modules.MapDisplay
 
printDate(String) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
printDocument(Document) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Outputs Document doc in System.out exactly as it is in the DOM.
printDocument(Document, File) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Outputs Document doc in File f exactly as it is in the DOM.
printElements() - Static method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
printForest() - Method in class uk.ac.bbk.dcs.automed.graph.Forest
 
printGraph(DirectedGraph) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
printNetworkHelp - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
printNetworkSyntax - Static variable in class uk.ac.ic.doc.automed.editor.Editor
 
printObject(Object, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
printObject(Object, Writer) - Static method in class uk.ac.ic.doc.automed.Util
 
printResultSet(ResultSet, OutputStream) - Static method in class uk.ac.ic.doc.automed.Util
 
printResultSet(ResultSet, Writer) - Static method in class uk.ac.ic.doc.automed.Util
 
printSQLFeedback(Object, OutputStream, String) - Static method in class uk.ac.ic.doc.automed.Util
 
printSQLFeedback(Object, Writer, String) - Static method in class uk.ac.ic.doc.automed.Util
 
printStackTrace() - Method in class uk.ac.ic.doc.automed.RepositoryAccessException
 
printStackTrace() - Method in class uk.ac.ic.doc.automed.reps.AutoRepException
 
printStackTrace() - Method in class uk.ac.ic.doc.automed.gui.GUIException
 
printStackTrace() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateDefinitionException
 
printTree(TreeNode, int) - Method in class uk.ac.bbk.dcs.automed.graph.Forest
 
process(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.FragmentProcessor
Replaces schemes with wrapper objects in the given ASG
process(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.FragmentProcessor
Replaces schemes with wrapper objects in the ASG with root n
processCommands() - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
processCommands(Reader, Writer) - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
processResultSet() - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
 
production_table() - Method in class uk.ac.bbk.dcs.automed.qproc.EnvParser
Access to production table.
production_table() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Access to production table.
PROPERTY_AUTOMED_SCHEMA - Static variable in class uk.ac.ic.doc.automed.reps.AccessMethod
Name to give to a AccessMethod property to hold the name of an AutoMed oriented schema that was produced from the schema associated with this AccessMethod.
PROPERTY_CREATE_TIME - Static variable in class uk.ac.ic.doc.automed.reps.AccessMethod
Name to give to a AccessMethod property for the time in milliseconds since 1 Jan 1970 that the datasource schema was created in the AutoMed repository.
protectIdentifier(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
protectString(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
protocol - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
Protocol - class uk.ac.ic.doc.automed.reps.Protocol.
The Protocol class describes a generic method of accessing data sources, such as JDBC or ODBC.
protocolDOM - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
protocolSAX - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 

Q

QLexer - class uk.ac.bbk.dcs.automed.qproc.QLexer.
 
QLexer(InputStream) - Constructor for class uk.ac.bbk.dcs.automed.qproc.QLexer
 
QLexer(Reader) - Constructor for class uk.ac.bbk.dcs.automed.qproc.QLexer
 
QParser - class uk.ac.bbk.dcs.automed.qproc.QParser.
CUP v0.10j generated parser.
QParser() - Constructor for class uk.ac.bbk.dcs.automed.qproc.QParser
Default constructor.
QParser(Scanner) - Constructor for class uk.ac.bbk.dcs.automed.qproc.QParser
Constructor which sets the default scanner.
QSym - class uk.ac.bbk.dcs.automed.qproc.QSym.
CUP generated class containing symbol constants.
QSym() - Constructor for class uk.ac.bbk.dcs.automed.qproc.QSym
 
query(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.LowLevelWrapperHdm
The query is given in the form of an string and returned as a Linked List of EdgeElement's
queryList - Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
QueryReformulator - class uk.ac.bbk.dcs.automed.qproc.QueryReformulator.
The class that goes through an ASG that applies to a global schema and reformulates the ASG so that it applies to all local schemas
QueryReformulator() - Constructor for class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
 
QueryReformulator(Schema, Schema[]) - Constructor for class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
 
QueryReformulator(Schema, Schema[], String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
Constructs a QueryReformulator object containing view definitions for the constructs of source in terms of the constructs of targets assuming the appropriate transformation pathways exist.
quitHelp - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
quitSyntax - Static variable in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 

R

r() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns a reference to the right child of the Cell
random(int) - Static method in class uk.ac.ic.doc.automed.matching.Util
 
RCB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
RDAB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
RDAB - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
read(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Schema
 
read(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
read(InputStream) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
read(InputStream, String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
 
read(InputStream, String) - Static method in class uk.ac.ic.doc.automed.reps.Model
 
readConfigFile() - Static method in class uk.ac.ic.doc.automed.DSR
Reads the current configuration file.
readConfigFile(String) - Static method in class uk.ac.ic.doc.automed.DSR
Reads the directives for the data sources defined in configFile.
readMetaData() - Method in class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
readScheme(Schema, Construct, Syntax.Tokenizer) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
readSchemeDefinition(Construct, String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Take a String containing the definition of a scheme of a SchemaObject and create an Object array that would be used in creating the SchemaObject
readSchemeRef(Syntax.Tokenizer) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
readSchemeTokens(Syntax.Tokenizer) - Static method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
reAssignPositions() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
reduce_table() - Method in class uk.ac.bbk.dcs.automed.qproc.EnvParser
Access to reduce_goto table.
reduce_table() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Access to reduce_goto table.
reEvaluateRequiredNumberOfElements() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
referenceHasFinalised(int) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
reflectCommandMethods() - Method in class uk.ac.ic.doc.automed.editor.CommandLineDriver
 
reformulate(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
Reformulates the query represented by the ASG g according to the view defintions it has stored.
registerWrapper(Class, Protocol, String, String) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Register an AutoMedWrapper implementation with the AutoMed system.
REL_BETWEEN_ELEMENTS - Variable in class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 
REL_BETWEEN_ELEMENTS - Variable in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
REL_BETWEEN_ELEMENTS - Variable in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
REL_BETWEEN_ELEMENTS - Variable in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
REL_BETWEEN_ELEMENTS - Variable in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
RelationshipConflictException - exception uk.ac.ic.doc.automed.matching.RelationshipConflictException.
 
RelationshipConflictException() - Constructor for class uk.ac.ic.doc.automed.matching.RelationshipConflictException
 
RelationshipConflictException(String) - Constructor for class uk.ac.ic.doc.automed.matching.RelationshipConflictException
 
RelationshipConflictException(String, Throwable) - Constructor for class uk.ac.ic.doc.automed.matching.RelationshipConflictException
 
RelationshipExtractor - class uk.ac.ic.doc.automed.matching.RelationshipExtractor.
 
RelationshipExtractor() - Constructor for class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
RelationshipExtractorException - exception uk.ac.ic.doc.automed.matching.RelationshipExtractorException.
 
RelationshipExtractorException() - Constructor for class uk.ac.ic.doc.automed.matching.RelationshipExtractorException
 
RelationshipExtractorException(String) - Constructor for class uk.ac.ic.doc.automed.matching.RelationshipExtractorException
 
RelationshipExtractorException(String, Throwable) - Constructor for class uk.ac.ic.doc.automed.matching.RelationshipExtractorException
 
RelationshipExtractorException(Throwable) - Constructor for class uk.ac.ic.doc.automed.matching.RelationshipExtractorException
 
RelativeEuclideanClassifier - class uk.ac.ic.doc.automed.matching.modules.RelativeEuclideanClassifier.
 
RelativeEuclideanClassifier(Cluster[]) - Constructor for class uk.ac.ic.doc.automed.matching.modules.RelativeEuclideanClassifier
 
reloadComponents() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
reloadModels() - Static method in class uk.ac.ic.doc.automed.reps.Model
This method empties the cached model data and then reloads it from the MDR as if the class had just been loaded.
reloadSchemas() - Static method in class uk.ac.ic.doc.automed.reps.Schema
 
remove() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Remove the SchemaObject form the repository.
remove() - Method in class uk.ac.ic.doc.automed.reps.Construct
Removes the Construct from the repository if it is not being used, and removes all the construct's Scheme elements.
remove() - Method in class uk.ac.ic.doc.automed.reps.Schema
Removes the Schema from the repository.
remove() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Remove this AccessMethod from the repository.
remove() - Method in class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
Removes this ConstructWithModelingProgram object.
remove() - Method in class uk.ac.ic.doc.automed.reps.Protocol
 
remove() - Method in class uk.ac.ic.doc.automed.reps.Model
Removes the Model from the repository.
remove() - Method in class uk.ac.ic.doc.automed.reps.Transformation
Removes this Transformation from the repository.
remove() - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Removes this TransformationArgumentDefinition from the TTR.
remove() - Method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Removes this TemplateArgumentSequence.
remove() - Method in class uk.ac.ic.doc.automed.templates.TemplateArgument
Removes this TemplateArgument from the TTR.
remove() - Method in class uk.ac.ic.doc.automed.templates.StatementExecution
Removes this StatementExecution from the TTR.
remove() - Method in class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
Removes this StatementArgumentDefinition from the TTSR.
remove() - Method in class uk.ac.ic.doc.automed.templates.Statement
Removes this Statement
remove() - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
Removes this RuntimeArgumentSequence.
remove() - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgument
Removes this RuntimeArgument from the TER.
remove() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Removes this CompositeTransformation
remove(int) - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Removes the stamement at the specified program counter in this program.
remove(int) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Removes the protocol with the given protocol PID.
remove(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Removes the Schema with the given schemaName.
remove(String) - Static method in class uk.ac.ic.doc.automed.reps.Protocol
Removes the protocol with the given protocolName.
removeAccessMethod(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes an access method from the STR.
removeAccessMethodBySID(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes all access methods for the given schema identifier (SID).
removeAccessMethods() - Method in class uk.ac.ic.doc.automed.reps.Schema
Remove all AccessMethods recorded for this schema.
removeAllItems() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
removeAllSchemes(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes all the schemes associated with the given schema object.
removeArgument(int) - Method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Removes a particular argument from this TemplateArgumentSequence.
removeArgument(int) - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
Removes a particular argument from this RuntimeArgumentSequence.
removeArgument(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Removes a particular position from a sequence of arguments
removeArgument(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a particular position from a sequence of arguments
removeArgumentDefinition(int) - Method in class uk.ac.ic.doc.automed.templates.Statement
Removes a particular argument definition from this Statements's argument definition list.
removeArgumentDefinition(int) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Removes a particular argument definition from this CompositeTransformation's argument definition list.
removeArguments(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Removes a particular sequence of arguments
removeArguments(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a particular sequence of arguments
removeArgumentSequences() - Method in class uk.ac.ic.doc.automed.gui.SchemaTool
 
removeAssociationBySFID(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Removes all associations for the given ssdformat identifier (SFID).
removeCompositeTransformation(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a composite transformation from the TTR comp_transformations table
removeCompositeTransformation(String) - Static method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Removes a CompositeTransformation
removeCompositeTransformationDefinition(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes all arguments definitions of a particular composite transformation
removeCompositeTransformationDefinition(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a particular position of a transformation's sequence of arguments
removeCompositeTransformationExecution(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Removes a template transformation's execution
removeCompositeTransformationExecution(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Removes a particular program counter of a template transformation's execution
removeCompositeTransformationInvocation(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Removes a composite transformation's invocation
removeCompositeTransformationProgram(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a particular template transformation's program
removeCompositeTransformationProgram(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a particular program counter of a transformation's template program
removeCompositeTransformationReturnedValuesArgumentDefinition(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Removes a composite transformation returned values definition
removeConstruct(int) - Static method in class uk.ac.ic.doc.automed.MDR
Remove the construct.
removeConstructFromMap(Construct) - Static method in class uk.ac.ic.doc.automed.reps.Construct
Deprecated. Remove constructs using @link remove() which will also do the job of this method Removes from the HashMap that holds the CID and ref to all Construct objs.
removeConstructFromMap(String) - Method in class uk.ac.ic.doc.automed.reps.Model
THIS METHOD DOESN'T DO ANYTHING AT THE MOMENT Sets the content of a particular position of the model's constructs list.
removeConstructModelingProgram(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Removes a particular construct's modeling program
removeConstructModelingProgram(int, int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Removes a particular program counter of a constrcut's modeling program
removeConstructScheme(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
Remove the construct.
removeCurrentNode(DefaultMutableTreeNode) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
Remove the currently selected node.
removeDuplicates(ModifiedArray) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.SortDistinct
 
removeDuplicates(SchemaElementPair[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
removeDuplicates(SchemaElementPairRelationship[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
removeExecutionTrace(int, Vector) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Removes the trace of a composite transformation's executionfrom the TER.
removeFromScope(TemplateCompilerSimulator.ITEM) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
removeHighlights(JTextComponent) - Method in class uk.ac.ic.doc.automed.editor.PatternWritingTool
/* Methods to highlight text in the textarea /
removeItem(InputItem) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
removeLayoutComponent(Component) - Method in class uk.ac.ic.doc.automed.editor.PinBoardLayout
 
removeMethod(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Removes the method from the SMR methods table.
removeMethodArgument(int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Removes all arguments of a particular method
removeMethodArgument(int, int) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Removes a particular position of a methods's arguments
removeModel(int) - Static method in class uk.ac.ic.doc.automed.MDR
Remove the modelling language.
removeModel(String) - Static method in class uk.ac.ic.doc.automed.reps.Model
Removes the Model with the given modelName.
removeModelingProgram() - Method in class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
Remove the ModelingProgram from this Construct.
removeNetworkChangeListener(NetworkChangeListener) - Method in class uk.ac.ic.doc.automed.reps.Network
 
removeNetworksListener(NetworksListener) - Static method in class uk.ac.ic.doc.automed.reps.Network
 
removePattern(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Removes a pattern from the SSMDR.
removeProtocol(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes the name of a protocol from the STR.
removeReturnedArgumentsDefinition() - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Removes the definitions of this transformation's returned arguments.
removeRuntimeArgumentSequence(int) - Static method in class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
Removes a RuntimeArgumentSequence.
removeSchema(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a schema from the STR.
removeSchemaChangeListener(SchemaChangeListener) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
removeSchemaObject(int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a schema object from the STR.
removeSchemaObject(SchemaObject, SchemaObject[]) - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
removeSchemaObjects() - Method in class uk.ac.ic.doc.automed.reps.Schema
Removes all schema objects that belong to the schema, i.e., the schema's SchemaObject list is emptied.
removeSchemasListener(SchemasListener) - Static method in class uk.ac.ic.doc.automed.reps.Schema
 
removeScheme(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a particular position of an object's scheme from the STR.
removeSSDFormat(int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Removes a ssd format from the SSMDR.
removeStatement(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Removes the statement from the TTSR statements table.
removeStatement(String) - Static method in class uk.ac.ic.doc.automed.templates.Statement
Removes a Statement
removeStatementDefinition(int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Removes all arguments definitions of a particular statement
removeStatementDefinition(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Removes a particular position of a statement's sequence of arguments
removeStatementExecution(int) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Removes a particular statement execution from this CompositeTransformations's template program
removeTemplateArgumentSequence(int) - Static method in class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Removes a TemplateArgumentSequence.
removeTransformation(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Removes a transformation from the STR.
removeTransformation(String, String) - Static method in class uk.ac.ic.doc.automed.reps.Transformation
Removes the transformation between two given schemas.
removeVertex(HDMElement) - Method in class uk.ac.ic.doc.automed.reps.HDMEdge
 
RemovingStatement - class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement.
 
RemovingStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
rename - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
RENAME(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
RENAME(TemplateCompilerSimulator.NAME) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
RenameStatement - class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement.
 
RenameStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
repaint() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
repaint(Graphics, boolean) - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
repair(boolean) - Static method in class uk.ac.ic.doc.automed.STR
Perform some operators to repair the STR repository after it has become corrupt.
replace(String, String) - Static method in class uk.ac.ic.doc.automed.Util
Returns a new string resulting from replacing all occurences of substring in string s with \ followed by substring.
replaceAllSchemaRefs(ASG, Schema) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
Replaces all references to Schemas within g by references to s.
replaceNullSchemaRefs(ASG, Schema) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
Replaces all references to a null Schema object in g with references to s.
reportClick() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
reportDragging() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
ReportException - class uk.ac.ic.doc.automed.editor.ReportException.
A Window to display a Java Exception.
ReportException() - Constructor for class uk.ac.ic.doc.automed.editor.ReportException
 
reportException(Exception) - Static method in class uk.ac.ic.doc.automed.editor.GUITool
 
reportException(String, Exception) - Static method in class uk.ac.ic.doc.automed.editor.GUITool
 
ReportException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.editor.ReportException
 
RepositoryAccessException - exception uk.ac.ic.doc.automed.RepositoryAccessException.
The class of exceptions generated when executing updates and queries to TTSR, TTR, TER, SMR.
RepositoryAccessException(String) - Constructor for class uk.ac.ic.doc.automed.RepositoryAccessException
 
RepositoryAccessException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.RepositoryAccessException
 
representsComprehension() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if the Cell is the root of an ASG representing a comprehension
representsGenerator() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if the Cell is the root of an ASG representing a generator
representsList() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if the Cell is the root of an ASG representing a list
representsPair() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if tag is "Tuple2"
representsSingleton() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
 
representsTuple() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns true if the Cell is the root of an ASG representing a Tuple
requestCancel() - Method in class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
requestFinish() - Method in class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
requestNext() - Method in class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
requestPrevious() - Method in class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
ReservedTokens - class uk.ac.bbk.dcs.automed.qproc.ReservedTokens.
 
ReservedTokens() - Constructor for class uk.ac.bbk.dcs.automed.qproc.ReservedTokens
 
resetArgumentSequence(TemplateArgumentSequence) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
reSetToolbars() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
resolveDisjoints() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
resolveNamingConflicts() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
resolveNamingConflicts() - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
resolveOverlaps() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
resolveStructuralConflicts() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
resolveStructuralConflicts() - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
resolveSubsumptions() - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
resultingObject() - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
resultingSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
resultingSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
resultingSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
resultingSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
resultingSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
resultingSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
resultingSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
resultingSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
resultingSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
resultList - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
resultSetToArray(ResultSet) - Static method in class uk.ac.ic.doc.automed.Util
 
retract() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Removes the SchemaObject from the repository, and all other objects which depend upon it.
retract() - Method in class uk.ac.ic.doc.automed.reps.Construct
Removes the Construct from the repository, and all other objects which depend upon it.
retract() - Method in class uk.ac.ic.doc.automed.reps.Schema
Removes the Schema from the repository, together with any SchemaObjects left in the schema, and any Transformations that link to this schema.
retract() - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Remove this AccessMethod, and any other classes that are dependent upon its existance.
retract() - Method in class uk.ac.ic.doc.automed.reps.Model
Removes the Model from the repository, together with all associated information --- in particular all Constructs belonging to the model are removed, and hence all SchemaObjects, and hence all Transformations on those objects.
retract() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
retract(String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Removes any Schema with the given name from the repository, together with any SchemaObjects left in the schema, and any Transformations that link to this schema.
retract(String) - Static method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
retract(String) - Static method in class uk.ac.ic.doc.automed.ssd.Pattern
 
returnGraph() - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
returnInternalSeperators(String) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
If commas that are not at the 'top level' have been removed, replace them e.g.
returnInternalSpaces(String) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
Changeback any seperators within an edge thats a span to spaces
returnMAP - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
returnTag(String) - Method in class uk.ac.bbk.dcs.automed.qproc.ReservedTokens
 
reverseKeywords - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
reverseRelationshipPair(SchemaElementPairRelationship) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
reverseRelationshipPairs(SchemaElementPairRelationship[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
rewind() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
 
Rhombus - class uk.ac.ic.doc.automed.gui.Rhombus.
 
Rhombus() - Constructor for class uk.ac.ic.doc.automed.gui.Rhombus
 
RIGHT_ARROW_ICON - Static variable in class uk.ac.ic.doc.automed.templates.gui.Accessories
 
rightBrace - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
rightBracket - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
rollback() - Method in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
rollback() - Method in class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
rollback() - Method in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
rollback() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
rollback() - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
rollback() - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
rollback() - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
rollback() - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
rollback() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
rollback(CompositeTransformation) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
rollbackSTR(Vector) - Static method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Removes the trace of a composite transformation's execution for the STR.
root() - Method in class uk.ac.bbk.dcs.automed.qproc.ASG
Returns the root of the ASG
rootNode - Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
RRB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
RRB - Static variable in class uk.ac.bbk.dcs.automed.qproc.FSym
 
RSB - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
Rule - interface uk.ac.bbk.dcs.automed.qproc.optimise.Rule.
 
Run - class uk.ac.ic.doc.automed.templates.gui.Run.
 
run() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
Run() - Constructor for class uk.ac.ic.doc.automed.templates.gui.Run
 
RuntimeArgument - class uk.ac.ic.doc.automed.templates.RuntimeArgument.
The class to create run-time (during a template composite transformation's execution) arguments
RuntimeArgument(int, int, String) - Constructor for class uk.ac.ic.doc.automed.templates.RuntimeArgument
Constructs a new RuntimeArgument storing the specified value.
RuntimeArgument(int, String) - Constructor for class uk.ac.ic.doc.automed.templates.RuntimeArgument
Constructs a new RuntimeArgument storing the specified value and creates a new sequence of arguments.
RuntimeArgumentSequence - class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence.
The class to create run-time (during a template composite transformation's execution) argument sequences
RuntimeArgumentSequence() - Constructor for class uk.ac.ic.doc.automed.templates.RuntimeArgumentSequence
Constructs a new RuntimeArgumentSequence without any RuntimeArgument objects

S

s - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
safeNextToken() - Method in class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
safeSQLString(String) - Static method in class uk.ac.ic.doc.automed.Util
Provide a version of a string that is safe to use in JDBC update statements.
sameScheme(SchemaObject) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Determines whether or not the scheme is the same as that of the given SchemaObject.
saveDegrees(String) - Method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
saveObjectPosition() - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
savePosition() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
saxDriver - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
SAXWrapper - class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper.
A lower level wrapper that conforms to the XMLWrapper class.
SAXWrapper(AccessMethod, String) - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapper
 
SAXWrapperFactory - class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapperFactory.
A lower level wrapper factory for accessing XML files using SAX.
SAXWrapperFactory() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.SAXWrapperFactory
 
schema - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
Schema - class uk.ac.ic.doc.automed.reps.Schema.
The Schema class represents a database schema as a set of SchemaObjects.
SCHEMA - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
SCHEMA_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
SCHEMA_AWARE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
A feature option to model SQL schemas.
SCHEMA_MERGING - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SCHEMA_NAME - Static variable in class uk.ac.ic.doc.automed.TemplateExecutionRepository
 
SCHEMA_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
schema() - Method in class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
Returns the schema reference for this SchemeInfo object
schemaAdded(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemasListener
 
schemaAdded(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
schemaARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
SchemaCanvas - class uk.ac.ic.doc.automed.gui.SchemaCanvas.
 
SchemaCanvas(Frame) - Constructor for class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
SchemaCanvas(Frame, JScrollPane) - Constructor for class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
SchemaChangeEvent - class uk.ac.ic.doc.automed.reps.SchemaChangeEvent.
 
SchemaChangeEvent(int, Positionable) - Constructor for class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
SchemaChangeListener - interface uk.ac.ic.doc.automed.reps.SchemaChangeListener.
 
schemaDoc - Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
SchemaElement - class uk.ac.ic.doc.automed.matching.SchemaElement.
 
SchemaElement(int, SchemaObject, boolean) - Constructor for class uk.ac.ic.doc.automed.matching.SchemaElement
 
SchemaElementPair - class uk.ac.ic.doc.automed.matching.SchemaElementPair.
 
SchemaElementPair(SchemaElement, SchemaElement) - Constructor for class uk.ac.ic.doc.automed.matching.SchemaElementPair
 
SchemaElementPairRelationship - class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship.
 
SchemaElementPairRelationship(SchemaElement, SchemaElement, SemanticRelationship) - Constructor for class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
 
SchemaFrame - class uk.ac.ic.doc.automed.templates.gui.SchemaFrame.
 
SchemaFrame() - Constructor for class uk.ac.ic.doc.automed.templates.gui.SchemaFrame
 
SchemaManager - class uk.ac.ic.doc.automed.gui.SchemaManager.
 
SchemaManager(GraphicCanvas) - Constructor for class uk.ac.ic.doc.automed.gui.SchemaManager
 
SchemaMapGenerator - class uk.ac.ic.doc.automed.reps.SchemaMapGenerator.
 
SchemaMapGenerator() - Constructor for class uk.ac.ic.doc.automed.reps.SchemaMapGenerator
 
SchemaMatchingSQLWrapperFactory - class uk.ac.ic.doc.automed.wrappers.SchemaMatchingSQLWrapperFactory.
An AutoMed high wrapper factory for creating SQLWrapper instances.
SchemaMatchingSQLWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.SchemaMatchingSQLWrapperFactory
Constructor.
SchemaModelingRepository - class uk.ac.ic.doc.automed.SchemaModelingRepository.
 
SchemaModelingRepository() - Constructor for class uk.ac.ic.doc.automed.SchemaModelingRepository
 
SchemaModelingRepositoryException - exception uk.ac.ic.doc.automed.SchemaModelingRepositoryException.
The class of exceptions generated by TemplateTransformationSyntaxRepository.
SchemaModelingRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.SchemaModelingRepositoryException
 
schemaName(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Given an HDM store name return the name of the schema it stores data for
SchemaObject - class uk.ac.ic.doc.automed.reps.SchemaObject.
The SchemaObject class
SchemaPanel - class uk.ac.ic.doc.automed.templates.gui.SchemaPanel.
 
SchemaPanel() - Constructor for class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
SchemaPanel(Schema) - Constructor for class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
SchemaPanel(Schema, Component) - Constructor for class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
schemaPanelScroller - Variable in class uk.ac.ic.doc.automed.templates.gui.SchemaFrame
 
schemaRemoved(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemasListener
 
schemaRemoved(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
schemaRemoved(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
SchemasListener - interface uk.ac.ic.doc.automed.reps.SchemasListener.
 
SchemasNotIdenticalException - exception uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException.
This exception is generated when an attempt to join to transformation pathways via createIdentTransformation() fails due to the schemas' object schemes being different.
SchemasNotIdenticalException(Schema, Schema, SchemaObject[], SchemaObject[]) - Constructor for class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException
 
SchemaTool - class uk.ac.ic.doc.automed.gui.SchemaTool.
 
SchemaTool() - Constructor for class uk.ac.ic.doc.automed.gui.SchemaTool
 
SchemaTransformationRepository - class uk.ac.ic.doc.automed.SchemaTransformationRepository.
Deprecated. Old name for the STR
SchemaTransformationRepository() - Constructor for class uk.ac.ic.doc.automed.SchemaTransformationRepository
Deprecated.  
SchemaTransformationRepositoryException - exception uk.ac.ic.doc.automed.SchemaTransformationRepositoryException.
Old name for STRException
SchemaTransformationRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.SchemaTransformationRepositoryException
 
schemaUIDDoc - Variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
scheme - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
scheme - Static variable in class uk.ac.bbk.dcs.automed.qproc.Cell
 
scheme - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
Scheme - class uk.ac.ic.doc.automed.reps.Scheme.
The Scheme class is used to described each element of the scheme of SchemaObject.
SCHEME_HDM_TYPE_C - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - constraints
SCHEME_HDM_TYPE_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_HDM_TYPE_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_HDM_TYPE_N1 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - new node at position 1
SCHEME_HDM_TYPE_N2 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - new node at position 2
SCHEME_HDM_TYPE_P1 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - pre-existing node at position 1
SCHEME_HDM_TYPE_P2 - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. HDM type of construct scheme - pre-existing node at position 2
SCHEME_LIST() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
SCHEME_LIST(TemplateCompilerSimulator.OBJECT) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
SCHEME_TYPE_ALTERNATION - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
SCHEME_TYPE_CONSTRUCT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
SCHEME_TYPE_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_TYPE_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
SCHEME_TYPE_NAME - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
SCHEME_TYPE_SEQUENCE - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Scheme type of construct scheme
scheme() - Method in class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
Returns the scheme for this SchemeInfo object as a string
Scheme(SchemaObject, int, SchemaObject, boolean, int, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.Scheme
Creates a new scheme for a schema object.
SchemeInfo - class uk.ac.bbk.dcs.automed.qproc.SchemeInfo.
Class containing a scheme and the reference to the schema the scheme belongs to.
SchemeInfo(Schema, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
SchemeInfo(String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
SchemeInfo(String, String) - Constructor for class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
SchemeInstances - class uk.ac.ic.doc.automed.wrappers.SchemeInstances.
Provides a representation of the data associated with a scheme in an AutoMed Schema.
SchemeInstances() - Constructor for class uk.ac.ic.doc.automed.wrappers.SchemeInstances
 
SCHEMELIST_STATEMENT - Static variable in class uk.ac.ic.doc.automed.templates.CompositeTransformation
 
SchemeListStatement - class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement.
 
SchemeListStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
schemeObjects - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
schemePosnARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
SchemeQuery - class uk.ac.ic.doc.automed.wrappers.SchemeQuery.
A generic representation of query expressions as trees, where each SchemeQuery has an operator type, and 0 or more fields that have a field type
SchemeQuery() - Constructor for class uk.ac.ic.doc.automed.wrappers.SchemeQuery
 
Second - class uk.ac.bbk.dcs.automed.qproc.functions.Second.
 
SECOND - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Granularity of one minute
Second() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Second
 
SELECT - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
The SQL SELECT operator; the first field should contain a SQLQuery with a FROM operator, and the remaining fields should be relation attribute identifiers
selectionModes - Variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
selectNewAutoMedWrapper(String, String, Protocol, String, String) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Using the url and driver information, try to select an appropriate type of AutoMedWrapper to create.
selectNewAutoMedWrapper(String, String, Protocol, String, String, String, AutoMedWrapperFactory) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Using the url and driver information, try to select an appropriate type of AutoMedWrapper to create.
selectPairs(ArrayList, ArrayList) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
selectPairs(ArrayList, SchemaElement[], int) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
self - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
SemanticException - exception uk.ac.ic.doc.automed.editor.SemanticException.
 
SemanticException(String, int) - Constructor for class uk.ac.ic.doc.automed.editor.SemanticException
 
SemanticRelationship - class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship.
 
SemanticRelationship() - Constructor for class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
 
SemiColon - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
sequence - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
sequencesARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
sequencesArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
sequencesMAP - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
SET_ICON - Static variable in class uk.ac.ic.doc.automed.templates.gui.Accessories
 
set_l(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Sets the reference to the left child of the Cell to n
set_r(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Sets the reference to the left child of the Cell to n
set(int, ModelingStatement) - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Replaces the statement at the specified program counter in this program with the specified statement.
set(int, Pattern) - Method in class uk.ac.ic.doc.automed.matching.modules.Vectors
 
setAccessMethodAWFFeatures(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the AutoMedWrapperFactory featrures of a particular access method.
setAccessMethodDBDriver(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the database driver of a particular access method.
setAccessMethodPassword(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the password of a particular access method.
setAccessMethodPID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the protocol identifier (PID) of a particular access method.
setAccessMethodProperty(int, String, String) - Static method in class uk.ac.ic.doc.automed.STR
 
setAccessMethodSID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the schema identifier (SID) of a particular access method.
setAccessMethodURL(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the URL of a particular access method.
setAccessMethodUsername(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the username of a particular access method.
setAccessMethodWrapper(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the wrapper of a particular access method.
setAddMissingNodes(boolean) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
If you try to add an instance of an edge then all the nodes and edges that are spans of the new edge must already exist in the database.
setArcDrawable(String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets the name of the class used to draw the arc of this Construct in any diagram containing it.
setArcHeight(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setArcWidth(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setArgConstruct(Construct) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the Construct in the ConstructScheme.
setArgument(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
setArgument(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM
 
setArgument(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS
 
setArgument(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION
 
setArgument(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
setArgument(TemplateArgumentSequence) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
setArgumentsArgIdRef(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets an argument's arg_id_ref field
setArgumentsArgPosRef(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets an argument's arg_pos_ref field
setArgumentSequence(TemplateArgumentSequence) - Method in class uk.ac.ic.doc.automed.templates.StatementExecution
Sets the TemplateArgumentSequence of this StatementExecution
setArgumentsValue(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Sets an argument's value field
setArgumentsValue(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets an argument's value field
setAtomicPairRelationships(SchemaElementPairRelationship[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
setAttribute(int, AutoMedType) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Set the value of a certain field
setAutoMedWrapperFactoryFeatures(int) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the password used for connecting to the database.
setBackgroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setBackgroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Construct
Set the default background colour to be used from drawing SchemaObjects of this Construct.
setBackgroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setBackgroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setBackgroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Model
Set the default background colour to be used from drawing SchemaObjects of this Model.
setBackgroundColor(Color) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setBackwardDegree(double) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
setBgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setBgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setBgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setBidirectionalDegrees(Hashtable, Hashtable) - Method in class uk.ac.ic.doc.automed.matching.modules.AbstractModule
 
setBlock(TStatement[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
setChildren(HashSet) - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
Sets the children of the node.
setClassName(int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Sets the class name of the method specified by meth_id
setCloseSchemeBracket(String) - Static method in class uk.ac.ic.doc.automed.STR
Set the String that is used to close a scheme name, such as "<<person>>" or "<<person,name>>" By default it is set to ">>".
setCommandClass(Class) - Static method in class uk.ac.ic.doc.automed.DSR
 
setCommandHelp(String[][]) - Static method in class uk.ac.ic.doc.automed.DSR
 
setCompiler(TemplateCompilerSimulator) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM
 
setCompositeTransformationDefinitionDescription(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets a particular transformation's argument definition (the description field).
setCompositeTransformationDefinitionFieldName(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets a particular transformation's argument definition (the field_name field).
setCompositeTransformationDefinitionIsReturnedValue(int, int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets a particular transformation's argument type.
setCompositeTransformationDefinitionTableName(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets a particular transformation's argument definition (the table_name field).
setCompositeTransformationDescription(int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the description of the composite transformation specified by trans_id
setCompositeTransformationExecutionArgId(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Sets the sequence of arguments identifier in a specific program counter in the composite transformation's execution
setCompositeTransformationExecutionStId(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Sets the statement identifier in a specific program counter in the composite transformation's execution
setCompositeTransformationName(int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the name of the composite transformation specified by trans_id
setCompositeTransformationPreservesEquivalence(int, boolean) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the preserves equivalence field of the composite transformation specified by trans_id
setCompositeTransformationProgramArgId(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the sequence of arguments ID in a specific program counter in the composite transformation's template program
setCompositeTransformationProgramStId(int, int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the statement identifier in a specific program counter in the specified composite transformation's template program
setCompositeTransformationReturnedValuesDefinitionArgId(int, int) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the sequence of arguments ID that defines the transformation's returned values.
setConcatenationOp(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
setConfigFileName(String) - Static method in class uk.ac.ic.doc.automed.DSR
Sets the name of the file used for data source defintiions, this resets any data cached in the MDR or STR and invalidates all objects returned by them prior to this call.
setConstraintDefinition(String, String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Set the definition of a constraint used within this Construct.
setConstraints(HDMConstraint[]) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
setConstraints(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
setConstraints(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
setConstraints(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
setConstraints(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
setConstruct(Construct) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
setConstructClass(int) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets the class of the construct.
setConstructClass(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructConstraint(int, String, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructMID(int, int) - Static method in class uk.ac.ic.doc.automed.MDR
Changes the modelling language that a construct belongs to
setConstructModelingProgramMethod(int, int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Sets the method in a specific program counter in the specified construct's modeling program
setConstructName(int, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructProperty(int, int, String, Integer, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructRoot(int, boolean) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeArgCID(int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeHDMType(int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeKey(int, int, boolean) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeLowerBound(int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeType(int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructSchemeUpperBound(int, int, int) - Static method in class uk.ac.ic.doc.automed.MDR
 
setConstructType(Construct) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Sets the construct type of the schema object.
setData(Object) - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Sets the Cell's data
setDataSource(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
Sets whether or not the schema represents an external data source.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Sets the name of the repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.MDR
Sets the name of the repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationRepository
Sets the name of the repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Sets the name of the repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Sets the name of the repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name of the Schema Transformation Repository in the local database.
setDataSourceName(String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Sets the name of the SemiStructured MetaData Repository in the local database.
setDataType(int) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
setDatatype(String, String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
The meta data for an HDM store is contained in the associated AutoMed schema except for the data type of the nodes in the schema which are set with this method (initially they default to String)
setDBDriver(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the database driver used for connecting to the database.
setDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.STR
Control the printing of debug information printed on the command line
setDebugLevel(int) - Static method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Set the debug level for all AutoMed wrappers.
setDefaultDataSource(String) - Static method in class uk.ac.ic.doc.automed.DSR
 
setDefaultModel() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
setDefaultUserName(String) - Static method in class uk.ac.ic.doc.automed.DSR
 
setDescription(String) - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Sets the description of this TransformationArgumentDefinition .
setDescription(String) - Method in class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
Sets the description of this StatementArgumentDefinition.
setDescription(String) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Sets this CompositeTransformation's description.
setDescription(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
Sets the description of the template transformation.
setDescription(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
setDialogueManager(TemplateInputDialogue) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
setDialogueManager(TemplateInputDialogue) - Method in interface uk.ac.ic.doc.automed.templates.gui.InteractiveSchemaDisplay
 
setDialogueManager(TemplateInputDialogue) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
setEdges(HDMEdge[]) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
setElements(HDMElement[]) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
setElements(Map) - Method in class uk.ac.ic.doc.automed.editor.EditorPanel
 
setEnable(boolean) - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
setEndAggregation(boolean) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setEndAngle(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setEndArrow(boolean) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setEnvironment(Environment) - Method in class uk.ac.bbk.dcs.automed.qproc.Evaluator
 
setExistenceModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
 
setExpression(String) - Method in class uk.ac.ic.doc.automed.reps.HDMConstraint
 
setExtDB(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
Sets whether or not the schema represents an extentional database.
setExtend(int) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setExtSchema(boolean) - Method in class uk.ac.ic.doc.automed.reps.Schema
Sets whether or not the schema is an extentional schema.
setFeatures(int) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Allows certain features of the Model used for Schemas generated by this wrapper factory.
setFeatures(int) - Method in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
Allows certain features of the SQL92 data model to be represented in the AutoMed repository.
setFeatures(int[]) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Allows certain features of the Model used for Schemas generated by this wrapper factory.
setFgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setFgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setFgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setFgColour(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setField(int, Object) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
Return a field in the query node.
setFieldName(String) - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Sets the fieldname of this TransformationArgumentDefinition .
setFieldName(String) - Method in class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
Sets the fieldname of this StatementArgumentDefinition.
setFocus(Point) - Method in class uk.ac.ic.doc.automed.gui.SchemaManager
 
setFontColour(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setFontColour(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setFontColour(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setFontColour(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setFontName(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setFontName(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setFontName(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setFontName(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setFontSize(int) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setFontSize(int) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setFontSize(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setFontSize(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setFontStyle(int) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setFontStyle(int) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setFontStyle(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setFontStyle(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setForeachTemplateSchema() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
setForegroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setForegroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Construct
Set the default foreground colour to be used from drawing SchemaObjects of this Construct.
setForegroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setForegroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setForegroundColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Model
Set the default foreground colour to be used from drawing SchemaObjects of this Model.
setForegroundColor(Color) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setForwardDegree(double) - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
setFromSchema(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
setFromSchema(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
setFromSchema(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
setFromSchema(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
setFromSchema(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
setFromSchema(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
setFromSchema(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
setFromSchema(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
setFromSchema(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
setFunction(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
setFunction(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
setFunction(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
setFunction(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
setGraphicManager(GraphicManager) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
setGraphics(Graphics) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setGraphics(Graphics) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setGraphics(Graphics) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setGraphics(Graphics) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setHdmStore(HdmStore) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Set the HdmStore that this wrapper will use
setHDMType(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the HDM type of the ConstructScheme.
setHeight(int) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setHeight(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setHeight(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setHighlight(boolean) - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
setIndex(int) - Method in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
setInput(int, TType) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
setInput(String, String, Construct) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
setInput(String, String, Construct, int) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
setInput(String, String, Construct, TTemplateArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
setInput(String, String, int) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
setInput(String, String, int, int) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
setInput(String, String, int, TTemplateArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
setInstances(ArrayList) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
setIsReturnedValue(boolean) - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Sets the isReturnedValue type of this TransformationArgumentDefinition.
setIterator(String, TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
setKey(boolean) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets whether or not the current scheme position is part the key of the whole scheme.
setLabel(String) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLabel(String) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabel(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabel(String) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLabelPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLabelPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabelPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabelPosition(int, int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLabelXPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLabelXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabelXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabelXPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLabelYPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setLabelYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setLabelYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setLabelYPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setLayout(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setLayoutAxis(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setList(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
setList(TArgument[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
setListData(Object[]) - Method in class uk.ac.ic.doc.automed.gui.LoadDialog
 
setListData(Object[]) - Method in class uk.ac.ic.doc.automed.templates.gui.LoadDialog
 
setLocation(Point) - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
setLower(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the lower bound indicating the minimum occurence of the ConstructScheme.
setMDR_DataSourceName(String) - Static method in class uk.ac.ic.doc.automed.MDR
Deprecated. use setDataSourceName() instead
setMethodArgumentsType(int, int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Sets a particular method's argument type.
setMethodName(int, String) - Static method in class uk.ac.ic.doc.automed.SchemaModelingRepository
Sets the name of the method specified by meth_id
setModel(Model) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
Sets the model of the template transformation.
setModelBaseName(String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
Each implementing class gives a name for the Models that will be generated for Schemas.
setModelingProgram(ModelingProgram) - Method in class uk.ac.ic.doc.automed.reps.ConstructWithModelingProgram
Defines the graphical representation of this Construct.
setModelName(int, String) - Static method in class uk.ac.ic.doc.automed.MDR
 
setName(String) - Method in class uk.ac.ic.doc.automed.reps.HDMElement
 
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets the name of the construct to the given string.
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Schema
Set the name of a Schema.
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Protocol
Sets the name of the protocol to the given string.
setName(String) - Method in class uk.ac.ic.doc.automed.reps.Model
Sets the model's name.
setName(String) - Method in class uk.ac.ic.doc.automed.templates.Statement
Sets this Statement's name.
setName(String) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Sets this CompositeTransformation's name.
setName(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
Sets the name of the template transformation.
setName(String) - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
setNameDimensions() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
setNewName(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
setNewName(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
setNewScope() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
 
setNodeLabels(Map) - Method in class uk.ac.ic.doc.automed.matching.modules.MapDisplay
This method is called from within the constructor to initialize the form.
setNodes(HDMNode[]) - Method in class uk.ac.ic.doc.automed.reps.HDMNetwork
 
setNonAtomicPairRelationships(SchemaElementPairRelationship[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
setNumberInstancesModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
 
setObject(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
setObjectToRename(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
setObserver(Component) - Method in class uk.ac.ic.doc.automed.templates.gui.SchemaPanel
 
setObserver(Component) - Method in interface uk.ac.ic.doc.automed.templates.gui.InteractiveSchemaDisplay
 
setObserver(Component) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
setOpenCloseSchemeBracket(String, String) - Static method in class uk.ac.ic.doc.automed.reps.Schema
Set the Strings that is used to open and close a scheme name, such as the "<<" and ">>" in "<<person>>" or "<<person,name>>".
setOpenSchemeBracket(String) - Static method in class uk.ac.ic.doc.automed.STR
Set the String that is used to open a scheme name, such as "<<person>>" or "<<person,name>>".
setOption(String, String) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
Make an option setting.
setOutput(int, TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
setOutput(String, String, TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
setOutputList(String, TStatementArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
setParent(SchemaPanel) - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
setParent(TreeNode) - Method in class uk.ac.bbk.dcs.automed.graph.TreeNode
Sets the parent node.
setPassword(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the password used for connecting to the database.
setPatternToSchemaObject(SSDPattern, SchemaObject, int) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
setPatternValue(int, String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Sets the value of the pattern.
setPoint1(Point) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setPoint2(Point) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setPosition(int) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setPosition(int, int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setPosition(int, int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setPrecisionModule(AbstractModule) - Method in class uk.ac.ic.doc.automed.matching.DegreeCombinator
 
setPreservesEquivalence(boolean) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Sets whether this CompositeTransformation preserves schema equivalence.
setProperty(String, String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets a property associated with this AccessMethod.
setProtocol(Protocol) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the protocol used for connecting to the database.
setProtocolName(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name of the protocol specified by the given protocol identifier (PID).
setRecord(CompositeTransformationRecord) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformationRecord
 
setReference(int) - Method in class uk.ac.ic.doc.automed.templates.TemplateArgument
Sets the TemplateArgument to refer to the transformation's arguments.
setReference(TemplateArgument) - Method in class uk.ac.ic.doc.automed.templates.TemplateArgument
Sets this TemplateArgument to refer to another TemplateArgument.
setReference(TemplateArgumentSequence, int) - Method in class uk.ac.ic.doc.automed.templates.TemplateArgument
Sets this TemplateArgument to refer to the specified position in the specified TemplateArgumentSequence.
setReferencedArguments() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
setReferencedArguments(Vector) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
setRelationship(SemanticRelationship) - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
 
setRelationships(SchemaElementPairRelationship[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
setRemovedObject(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
setReturnedArgumentsDefinition(TemplateArgumentSequence) - Method in class uk.ac.ic.doc.automed.templates.CompositeTransformation
Sets the arguments that store returned values after the transformation's invocation.
setRoot(boolean) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets whether or not the construct is a construct type of its underlying data model.
setRounded(boolean) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setSchema(int, int) - Static method in class uk.ac.ic.doc.automed.SSMDR
Sets the SID for the ssd format.
setSchema(Schema) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the schema that represents the database to which the access method connects.
setSchema(Schema) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
setSchema(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
Set the value of the schema that this wrapper is for
setSchema(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
setSchemaBackgroundColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaDataSource(int, boolean) - Static method in class uk.ac.ic.doc.automed.STR
Sets whether or not a schema is a data source.
setSchemaExtDB(int, boolean) - Static method in class uk.ac.ic.doc.automed.STR
Sets whether or not a schema is an extentional database.
setSchemaExtSchema(int, boolean) - Static method in class uk.ac.ic.doc.automed.STR
Sets whether or not a schema is an extentional schema.
setSchemaForegroundColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaLabelPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaName(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name of schema.
setSchemaObjectBackgroundColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectCID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the construct identifier (CID) of the schema object.
setSchemaObjectForegroundColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectLabelPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectSID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the schema identifier (SID) to which a particular schema object belongs.
setSchemaObjectTextColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemaObjectValue(int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the name/value of the schema object.
setSchemaPos(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setSchemas(Schema[]) - Method in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
setSchemas(Schema[]) - Method in class uk.ac.ic.doc.automed.matching.RelationshipExtractor
 
setSchemas(Schema[]) - Method in class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
setSchemas(Schema[]) - Method in class uk.ac.ic.doc.automed.matching.Integrator
 
setSchemaSubnetSID(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the subnet SID of a schema.
setSchemaTextColor(int, int) - Static method in class uk.ac.ic.doc.automed.STR
 
setScheme(Object[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
setSchemeObjects() - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
setSchemeSOBID(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the referenced schema object in a specific position of the scheme of a schema object.
setSchemeType(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the scheme type of the ConstructScheme.
setScrollPane(JScrollPane) - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
setSectionDebugLevel(int, int) - Static method in class uk.ac.ic.doc.automed.STR
Set the level of debug info output to the console for a numbered section of code.
setShape(SchemaShape) - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
setShapeLocation(Point) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setShapeLocation(Point) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setShapeLocation(Point) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setSimilarityDegree(double) - Method in class uk.ac.ic.doc.automed.matching.modules.SimilarCluster
 
setSmartQuoting(boolean) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
setSSDFormatName(int, String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Sets the name of ssd format.
setSSDPattern(SSDPattern) - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
setSSMDR_DataSourceName(String) - Static method in class uk.ac.ic.doc.automed.SSMDR
Deprecated. use setDataSourceName()
setStartAggregation(boolean) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setStartAngle(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setStartArrow(boolean) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setStatement(Statement) - Method in class uk.ac.ic.doc.automed.templates.StatementExecution
Sets the Statement of this StatementExecution.
setStatementDefinitionDescription(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Sets a particular statement's argument definition (the description field).
setStatementDefinitionFieldName(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Sets a particular statement's argument definition (the field_name field).
setStatementDefinitionTableName(int, int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Sets a particular statement's argument definition (the table_name field).
setStatementName(int, String) - Static method in class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
Sets the name of the statement specified by st_id
setStatementSequence(TStatement[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
setSTR_DataSourceName(String) - Static method in class uk.ac.ic.doc.automed.STR
Deprecated. use setDataSourceName()
setString(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
setStyle(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setStyle(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setStyle(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setStyle(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setTableName(String) - Method in class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Sets the tablename of this TransformationArgumentDefinition .
setTableName(String) - Method in class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
Sets the tablename of this StatementArgumentDefinition.
setText(String) - Method in class uk.ac.ic.doc.automed.editor.DrawVertex
Set the text that will be used in this {link @Drawable}, and record its width and heigh in textBounds.
setText(String) - Method in class uk.ac.ic.doc.automed.gui.ToolTip
Sets the text to be displayed by this ToolTip.
setText(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setText(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setText(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setText(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setTextColor(Color) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setTextColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Construct
Set the default text colour to be used from drawing SchemaObjects of this Construct.
setTextColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setTextColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setTextColor(Color) - Method in class uk.ac.ic.doc.automed.reps.Model
Set the default text colour to be used from drawing SchemaObjects of this Model.
setTextColor(Color) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setTextLocation(String) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setTextLocation(String) - Method in class uk.ac.ic.doc.automed.gui.Line
 
setTextLocation(String) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setTextLocation(String) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setTranAction(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the action of a transformation between two schemas.
setTranConstraint(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the constraint of a transformation between two schemas.
setTranFromObject(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the object identifier (OBID) of the schema object to be transformed in a transformation
setTranFunction(int, int, String) - Static method in class uk.ac.ic.doc.automed.STR
Sets the function of a transformation between two schemas.
setTranToObject(int, int, int) - Static method in class uk.ac.ic.doc.automed.STR
Sets the object identifier (OBID) of the schema object as a result of a transformation.
setType(TType) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
setType(TType) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
setType(TType) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
setTypeInstance(int) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
setTypeInstance(int) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
setTypeInstance(int) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
SetUnion - class uk.ac.bbk.dcs.automed.qproc.functions.SetUnion.
 
SetUnion() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.SetUnion
 
setUpper(int) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
Sets the upper bound indicating the maximum occurence of the ConstructScheme.
setURL(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the URL of the database to which the access method connects.
setUsername(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the username used for connecting to the database.
setValue(String) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
Sets the name/value of the schema object.
setValue(String) - Method in class uk.ac.ic.doc.automed.templates.TemplateArgument
Sets the value of this TemplateArgument.
setValue(String) - Method in class uk.ac.ic.doc.automed.templates.RuntimeArgument
Sets the value of this RuntimeArgument.
setValue(String) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
setValue(String[]) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
setValue(TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
setVariable(String, TArgument) - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
setVertexDrawable(String) - Method in class uk.ac.ic.doc.automed.reps.Construct
Sets the name of the class used to draw the vertex of this Construct in any diagram containing it.
setWidth(int) - Method in class uk.ac.ic.doc.automed.gui.Rhombus
 
setWidth(int) - Method in class uk.ac.ic.doc.automed.gui.Box
 
setWidth(int) - Method in class uk.ac.ic.doc.automed.gui.Arc
 
setWrapper(String) - Method in class uk.ac.ic.doc.automed.reps.AccessMethod
Sets the wrapper asscociated with this.
setXPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setXPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setXPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setXPos(int) - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Network
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
setYPos(int) - Method in interface uk.ac.ic.doc.automed.editor.Positionable
 
setYPos(int) - Method in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 
show() - Method in class uk.ac.ic.doc.automed.gui.ToolTip
 
showDialog() - Method in class uk.ac.ic.doc.automed.gui.LoadDialog
 
showDialog() - Method in class uk.ac.ic.doc.automed.templates.gui.LoadDialog
 
SimilarCluster - class uk.ac.ic.doc.automed.matching.modules.SimilarCluster.
 
SimilarCluster(Cluster, double) - Constructor for class uk.ac.ic.doc.automed.matching.modules.SimilarCluster
 
SimilarSchemaElementPair - class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair.
 
SimilarSchemaElementPair(SchemaElementPair, BidirectionalDegree) - Constructor for class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
 
SimilarSchemaElementPair(SchemaElement, SchemaElement, BidirectionalDegree) - Constructor for class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
 
Single - class uk.ac.bbk.dcs.automed.qproc.functions.Single.
 
SINGLE - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
SINGLE - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
SINGLE_ICON - Static variable in class uk.ac.ic.doc.automed.templates.gui.Accessories
 
Single() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Single
 
singleton() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns the root of an ASG representing an empty list
singletonsARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
singletonsArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
singletonsMAP - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
size() - Method in class uk.ac.ic.doc.automed.reps.Pathway
Returns the number of Schemas in the pathway.
size() - Method in class uk.ac.ic.doc.automed.reps.ModelingProgram
Returns the number of statements in this program.
size() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
 
size() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
 
size() - Method in class uk.ac.ic.doc.automed.tml.TempPathway
 
SIZEOF(TemplateCompilerSimulator.LIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
Sort - class uk.ac.bbk.dcs.automed.qproc.functions.Sort.
 
Sort() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Sort
 
sort(ModifiedArray) - Static method in class uk.ac.bbk.dcs.automed.qproc.functions.Utilities
 
SortDistinct - class uk.ac.bbk.dcs.automed.qproc.functions.SortDistinct.
 
SortDistinct() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.SortDistinct
 
SOURCE_PREFIX - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapperFactory
String prefixed to AutoMed oriented Model names in order to obtain source oriented Model names.
source() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
Returns the global schema
Span - class uk.ac.bbk.dcs.automed.hdmstore.Span.
A Span represents one element in a HDM edge.
special - Static variable in class uk.ac.bbk.dcs.automed.qproc.Cell
 
SQL_MODEL_FOREIGN_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SQL_MODEL_INDEX - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SQL_MODEL_PRIMARY_KEY - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SQL_MODEL_TABLE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
The name of the Construct used to represent SQL tables.
SQLIntegrator - class uk.ac.ic.doc.automed.matching.SQLIntegrator.
 
SQLIntegrator() - Constructor for class uk.ac.ic.doc.automed.matching.SQLIntegrator
 
SQLQuery - class uk.ac.ic.doc.automed.wrappers.SQLQuery.
An SQLQuery expression tree that can be generated by the high level wrapper SQLWrapper and used by a low level wrapper as the basis for generating SQL queries on a relational database.
SQLQuery(AutoMedQueryToken, Object[]) - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
SQLRelationshipExtractor - class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor.
 
SQLRelationshipExtractor() - Constructor for class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
SQLResult - class uk.ac.ic.doc.automed.wrappers.SQLResult.
Provides a representation of the data associated with a scheme in an AutoMed Schema.
SQLResult(int) - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLResult
return the instance of the scheme which the cursor currently points at, as an ArrayList of Objects.
SQLTranslator - class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator.
 
SQLTranslator() - Constructor for class uk.ac.bbk.dcs.automed.wrappers.SQLTranslator
 
SQLWrapper - class uk.ac.ic.doc.automed.wrappers.SQLWrapper.
An AutoMed high wrapper for connecting to SQL databases that have a JBDC driver.
SQLWrapper() - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapper
 
SQLWrapperFactory - class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory.
An AutoMed high wrapper factory for creating SQLWrapper instances.
SQLWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.SQLWrapperFactory
 
SSDFormat - class uk.ac.ic.doc.automed.ssd.SSDFormat.
The SSDFormat class represents a format of a particular semistructured datasource as a set of SSDPatterns.
SSDFormat(String) - Constructor for class uk.ac.ic.doc.automed.ssd.SSDFormat
 
SSDFunctionTable - class uk.ac.ic.doc.automed.wrappers.SSDFunctionTable.
 
SSDFunctionTable() - Constructor for class uk.ac.ic.doc.automed.wrappers.SSDFunctionTable
 
SSDPattern - class uk.ac.ic.doc.automed.ssd.SSDPattern.
The SSDPattern class represents a pattern used in a particular SSDFormat.
SSDPattern(int) - Constructor for class uk.ac.ic.doc.automed.ssd.SSDPattern
 
SSDPattern(Pattern) - Constructor for class uk.ac.ic.doc.automed.ssd.SSDPattern
 
SSMDR - class uk.ac.ic.doc.automed.SSMDR.
The SSMD library<<
SSMDR_DataSourceName - Static variable in class uk.ac.ic.doc.automed.SSMDR
 
SSMDR() - Constructor for class uk.ac.ic.doc.automed.SSMDR
 
SSMDRException - exception uk.ac.ic.doc.automed.SSMDRException.
The class of exceptions generated by SSMD.
SSMDRException(String) - Constructor for class uk.ac.ic.doc.automed.SSMDRException
Creates a SSMDException.
StandardFoldFunctionTable - class uk.ac.bbk.dcs.automed.qproc.optimise.StandardFoldFunctionTable.
 
StandardFoldFunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.qproc.optimise.StandardFoldFunctionTable
 
StandardFunctionTable - class uk.ac.bbk.dcs.automed.qproc.StandardFunctionTable.
Class that creates a FunctionTable containing all currently implemented functions.
StandardFunctionTable() - Constructor for class uk.ac.bbk.dcs.automed.qproc.StandardFunctionTable
 
standardStroke - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
standardStroke - Static variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
start_production() - Method in class uk.ac.bbk.dcs.automed.qproc.EnvParser
Indicates start production.
start_production() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Indicates start production.
start_state() - Method in class uk.ac.bbk.dcs.automed.qproc.EnvParser
Indicates start state.
start_state() - Method in class uk.ac.bbk.dcs.automed.qproc.QParser
Indicates start state.
START() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
 
START() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
startDocument() - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
STARTED - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
startElement(String, String, String, Attributes) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
state - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
Statement - class uk.ac.ic.doc.automed.templates.Statement.
The class to create statements that can be used in a template transformation's program.
Statement(String) - Constructor for class uk.ac.ic.doc.automed.templates.Statement
Constructs a new Statement without any StatementArgumentDefinition objects.
statementArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
statementArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
statementArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
statementArgSeq - Variable in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
StatementArgumentDefinition - class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition.
The class used to define a statement's arguments.
StatementArgumentDefinition(int, int, String, String, String) - Constructor for class uk.ac.ic.doc.automed.templates.StatementArgumentDefinition
Constructs a new StatementArgumentDefinition.
statementExecuted - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
statementExecuted - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
StatementExecution - class uk.ac.ic.doc.automed.templates.StatementExecution.
The class used to define a template transformation's program.
StatementExecution(int, int, Statement, TemplateArgumentSequence) - Constructor for class uk.ac.ic.doc.automed.templates.StatementExecution
Constructs a new StatementExecution.
statementType - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
StatisticsModule - class uk.ac.ic.doc.automed.matching.modules.StatisticsModule.
 
StatisticsModule(ArrayList, ArrayList) - Constructor for class uk.ac.ic.doc.automed.matching.modules.StatisticsModule
 
stmArg - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
stopped() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
STR - class uk.ac.ic.doc.automed.STR.
The STR library.
STR_DataSourceName - Static variable in class uk.ac.ic.doc.automed.STR
 
STR() - Constructor for class uk.ac.ic.doc.automed.STR
 
STRException - exception uk.ac.ic.doc.automed.STRException.
The class of exceptions generated by STR.
STRException(String) - Constructor for class uk.ac.ic.doc.automed.STRException
Creates a STRException.
string - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
STRING - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent an arbitrary length string in the unicode character set.
STRING - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
STRING_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
stringSafe(String) - Static method in class uk.ac.ic.doc.automed.reps.Syntax
 
stringToObject(String, Class) - Static method in class uk.ac.ic.doc.automed.Util
 
stripUIDs(Document) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
This method takes as input an XML document in DOM format, duplicates it, then strips the uids from the duplicated DOM.
STRMethodTest - class uk.ac.ic.doc.automed.STRMethodTest.
 
STRMethodTest() - Constructor for class uk.ac.ic.doc.automed.STRMethodTest
 
StrToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
SubBag - class uk.ac.bbk.dcs.automed.qproc.functions.SubBag.
 
SubBag() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.SubBag
 
Subset - class uk.ac.ic.doc.automed.matching.relationships.Subset.
 
Subsumption - class uk.ac.ic.doc.automed.matching.relationships.Subsumption.
 
Subsumption() - Constructor for class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 
subsumptions - Variable in class uk.ac.ic.doc.automed.matching.Integrator
 
subtract(AutoMedFloat) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return the difference of two AutoMedFloats.
subtract(AutoMedInteger) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return the difference of two AutoMedIntegers.
Sum - class uk.ac.bbk.dcs.automed.qproc.functions.Sum.
 
Sum() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Sum
 
SUPER_TYPE - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
Superset - class uk.ac.ic.doc.automed.matching.relationships.Superset.
 
sval - Variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
swap(int, int) - Method in class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray
 
SYMBOL_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
symbolHeight - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
symbolWidth - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
syncWithRepository() - Static method in class uk.ac.ic.doc.automed.reps.Transformation
 
Syntax - class uk.ac.ic.doc.automed.reps.Syntax.
 
Syntax - class uk.ac.ic.doc.automed.editor.Syntax.
 
Syntax.Token - class uk.ac.ic.doc.automed.reps.Syntax.Token.
 
Syntax.Tokenizer - class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer.
 
Syntax.Tokenizer(Reader) - Constructor for class uk.ac.ic.doc.automed.reps.Syntax.Tokenizer
 
Syntax() - Constructor for class uk.ac.ic.doc.automed.reps.Syntax
 
Syntax() - Constructor for class uk.ac.ic.doc.automed.editor.Syntax
 
SyntaxException - exception uk.ac.ic.doc.automed.reps.SyntaxException.
 
SyntaxException - exception uk.ac.ic.doc.automed.editor.SyntaxException.
 
SyntaxException(String) - Constructor for class uk.ac.ic.doc.automed.reps.SyntaxException
 
SyntaxException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.reps.SyntaxException
 
SyntaxException(String, int) - Constructor for class uk.ac.ic.doc.automed.editor.SyntaxException
 
SyntaxException(String, int, String, String) - Constructor for class uk.ac.ic.doc.automed.reps.SyntaxException
 
SYSTEM - Static variable in class uk.ac.ic.doc.automed.editor.UserActionClass
 
sysvariable - Static variable in class uk.ac.bbk.dcs.automed.qproc.Cell
 
SysVarToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 

T

TABLE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
 
tables - Variable in class uk.ac.ic.doc.automed.matching.SQLRelationshipExtractor
 
tag() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns the Cell's tag
targets() - Method in class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
Returns the array of local schemas
TArgument - class uk.ac.ic.doc.automed.templates.wrapper.TArgument.
 
TArgument() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TArgument
 
TConstants - class uk.ac.ic.doc.automed.templates.wrapper.TConstants.
 
TConstants() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TConstants
 
TemplateArgument - class uk.ac.ic.doc.automed.templates.TemplateArgument.
The class to create compile-time arguments (arguments used in template transformation's definitions)
TemplateArgument(int, int) - Constructor for class uk.ac.ic.doc.automed.templates.TemplateArgument
Constructs a new TemplateArgument that refers to a composite transformation's arguments and creates a new sequence of arguments.
TemplateArgument(int, int, int) - Constructor for class uk.ac.ic.doc.automed.templates.TemplateArgument
Constructs a new TemplateArgument that refers to a composite transformation's arguments.
TemplateArgument(int, int, String) - Constructor for class uk.ac.ic.doc.automed.templates.TemplateArgument
Constructs a new TemplateArgument storing the specified value.
TemplateArgument(int, int, TemplateArgument) - Constructor for class uk.ac.ic.doc.automed.templates.TemplateArgument
Constructs a new TemplateArgument that refers to another TemplateArgument
TemplateArgument(int, int, TemplateArgumentSequence, int) - Constructor for class uk.ac.ic.doc.automed.templates.TemplateArgument
Constructs a new TemplateArgument that refers to another argument
TemplateArgument(int, String) - Constructor for class uk.ac.ic.doc.automed.templates.TemplateArgument
Constructs a new TemplateArgument storing the specified value and creates a new sequence of arguments.
TemplateArgument(int, TemplateArgument) - Constructor for class uk.ac.ic.doc.automed.templates.TemplateArgument
Constructs a new TemplateArgument that refers to another TemplateArgument and creates a new argument sequence
TemplateArgument(int, TemplateArgumentSequence, int) - Constructor for class uk.ac.ic.doc.automed.templates.TemplateArgument
Constructs a new TemplateArgument that refers to another argument and creates a new argument sequence
TemplateArgumentSequence - class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence.
The class to create compile-time argument sequences (sequences used in template transformation's definitions)
TemplateArgumentSequence() - Constructor for class uk.ac.ic.doc.automed.templates.TemplateArgumentSequence
Constructs a new TemplateArgumentSequence without any TemplateArgument objects.
TemplateCompilerSimulator - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.
 
TemplateCompilerSimulator.CONSTRAINTS - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS.
 
TemplateCompilerSimulator.CONSTRAINTS() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS
 
TemplateCompilerSimulator.CONSTRAINTS(String) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS
 
TemplateCompilerSimulator.CONSTRAINTS(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS
 
TemplateCompilerSimulator.CONSTRAINTSLIST - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTSLIST.
 
TemplateCompilerSimulator.CONSTRAINTSLIST(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTSLIST
 
TemplateCompilerSimulator.CONSTRUCT - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRUCT.
 
TemplateCompilerSimulator.CONSTRUCT() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRUCT
 
TemplateCompilerSimulator.FUNCTION - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION.
 
TemplateCompilerSimulator.FUNCTION() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION
 
TemplateCompilerSimulator.FUNCTION(String) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION
 
TemplateCompilerSimulator.FUNCTION(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION
 
TemplateCompilerSimulator.FUNCTIONLIST - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTIONLIST.
 
TemplateCompilerSimulator.FUNCTIONLIST(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTIONLIST
 
TemplateCompilerSimulator.ITEM - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM.
 
TemplateCompilerSimulator.ITEM() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM
 
TemplateCompilerSimulator.ITEM(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.ITEM
 
TemplateCompilerSimulator.LIST - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.LIST.
 
TemplateCompilerSimulator.LIST() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.LIST
 
TemplateCompilerSimulator.LIST(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.LIST
 
TemplateCompilerSimulator.NAME - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.NAME.
 
TemplateCompilerSimulator.NAME(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.NAME
 
TemplateCompilerSimulator.NAMELIST - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.NAMELIST.
 
TemplateCompilerSimulator.NAMELIST(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.NAMELIST
 
TemplateCompilerSimulator.OBJECT - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT.
 
TemplateCompilerSimulator.OBJECT(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECT
 
TemplateCompilerSimulator.OBJECTLIST - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECTLIST.
 
TemplateCompilerSimulator.OBJECTLIST(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.OBJECTLIST
 
TemplateCompilerSimulator.SCHEME - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.SCHEME.
 
TemplateCompilerSimulator.SCHEME() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.SCHEME
 
TemplateCompilerSimulator.STRING - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.STRING.
 
TemplateCompilerSimulator.STRING() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.STRING
 
TemplateCompilerSimulator.STRING(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.STRING
 
TemplateCompilerSimulator.STRINGLIST - class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.STRINGLIST.
 
TemplateCompilerSimulator.STRINGLIST(TArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.STRINGLIST
 
TemplateCompilerSimulator() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TemplateCompilerSimulator(AutoMedWrapperFactory) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TemplateDefinitionException - exception uk.ac.ic.doc.automed.templates.wrapper.TemplateDefinitionException.
 
TemplateDefinitionException(String) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateDefinitionException
 
TemplateDefinitionException(String, Exception) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TemplateDefinitionException
 
templateDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
 
templateDescription() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TemplateDialogueLauncher - class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher.
 
TemplateDialogueLauncher(Frame) - Constructor for class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
TemplateExecutionRepository - class uk.ac.ic.doc.automed.TemplateExecutionRepository.
Manipulate the Template Execution Repository and supply the methods to invoke template transformations
TemplateExecutionRepository() - Constructor for class uk.ac.ic.doc.automed.TemplateExecutionRepository
 
TemplateExecutionRepositoryException - exception uk.ac.ic.doc.automed.TemplateExecutionRepositoryException.
The class of exceptions generated by TemplateExecutionRepository.
TemplateExecutionRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.TemplateExecutionRepositoryException
 
TemplateInputDialogue - class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue.
 
TemplateInputDialogue(int, int, InteractiveSchemaDisplay, TemplateFrame) - Constructor for class uk.ac.ic.doc.automed.templates.gui.TemplateInputDialogue
 
templateName() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefaultTemplate
 
templateName() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
Return the name used to identify the template transformation that will be compiled by an implementation of this class.
templateStatements - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TemplateTransformationRepository - class uk.ac.ic.doc.automed.TemplateTransformationRepository.
Manipulate the Template Transformation Repository, built template transformations.
TemplateTransformationRepository() - Constructor for class uk.ac.ic.doc.automed.TemplateTransformationRepository
 
TemplateTransformationRepositoryException - exception uk.ac.ic.doc.automed.TemplateTransformationRepositoryException.
The class of exceptions generated by TemplateTransformationRepository.
TemplateTransformationRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.TemplateTransformationRepositoryException
 
TemplateTransformationRepositoryExtension - class uk.ac.ic.doc.automed.TemplateTransformationRepositoryExtension.
 
TemplateTransformationRepositoryExtension() - Constructor for class uk.ac.ic.doc.automed.TemplateTransformationRepositoryExtension
 
TemplateTransformationSyntaxRepository - class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository.
Manipulate the Template Transformation Syntax Repository, create new statements.
TemplateTransformationSyntaxRepository() - Constructor for class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepository
 
TemplateTransformationSyntaxRepositoryException - exception uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepositoryException.
The class of exceptions generated by TemplateTransformationSyntaxRepository.
TemplateTransformationSyntaxRepositoryException(String) - Constructor for class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepositoryException
 
temporaryForeachOutputVariables - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TempPathway - class uk.ac.ic.doc.automed.tml.TempPathway.
This class represents a temporary pathway used solely for the purpose of pathway optimisation.
TempTML - class uk.ac.ic.doc.automed.tml.TempTML.
This class represents a temporary TML in a TempPathway.
testIdenticalSchemas(Schema, Schema) - Method in class uk.ac.ic.doc.automed.tml.TempPathway
 
text - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
Text - Static variable in class uk.ac.bbk.dcs.automed.qproc.EnvSym
 
text() - Method in class uk.ac.bbk.dcs.automed.qproc.Cell
Returns the string representation of the object contained in the Cell
textFieldCompleted(InputItem, String) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
textHeight - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
textWidth - Variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
thickness - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
thickness - Static variable in class uk.ac.ic.doc.automed.editor.DrawArc
 
TIME - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
TIME - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a time (on a particular day)
TIME_TOKEN - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
title(String) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Prints a line of stars, then the input title centered inside a line of stars, then another line of stars.
TML - class uk.ac.ic.doc.automed.tml.TML.
This class represents a Transformation in TML notation.
TML(int, Schema, Schema, SchemaObject, SchemaObject, String, String) - Constructor for class uk.ac.ic.doc.automed.tml.TML
 
TML(SchemaObject) - Constructor for class uk.ac.ic.doc.automed.tml.TML
 
TML(TML) - Constructor for class uk.ac.ic.doc.automed.tml.TML
 
TML(Transformation) - Constructor for class uk.ac.ic.doc.automed.tml.TML
 
toActionString(int) - Method in class uk.ac.ic.doc.automed.tml.TML
 
toASG(LinkedList) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
Convert a LinkedList of edge elements and convert to an ASG
toASG(LinkedList, boolean) - Static method in class uk.ac.bbk.dcs.automed.hdmstore.EdgeElement
Convert a LinkedList of edge elements and convert to an ASG If is true return elements as a list, otherwise as a tuple (so that the ASG returned is a list of tuples)
toASGList(ArrayList) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
Generates an ASG list from an ArrayList.
toASGTuple(ArrayList) - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
Generates an ASG tuple from an ArrayList.
toForest(Forest) - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraph
This method first divides a given graph into subGraphs.
tokenize(String) - Static method in class uk.ac.ic.doc.automed.Util
Returns the tokens in s (as defined by default StringTokenizer) as an array
toObjectARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
toObjectARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
toObjectARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
ToolTip - class uk.ac.ic.doc.automed.gui.ToolTip.
Customized ToolTip class.
ToolTip(Frame) - Constructor for class uk.ac.ic.doc.automed.gui.ToolTip
Creates a new ToolTip.
toPrintString() - Method in class uk.ac.ic.doc.automed.tml.TML
 
toSchemaARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Node
 
toString() - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Network
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Schema
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
toString() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
toString() - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.SchemeInfo
 
toString() - Method in class uk.ac.bbk.dcs.automed.qproc.ASG
 
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTime
Return a string representation of this AutoMedTime using ISO format.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Convert this SQLQuery into a text equivalent.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedString
Return a string representation of this AutoMedString.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Produce a string representation of the AutoMedTuple
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedFloat
Return a string representation of this AutoMedFloat.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedInteger
Return a string representation of this AutoMedInteger.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Return a string representation of this AutoMedType.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedBoolean
Return a string representation of this AutoMedBoolean.
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Produce a string representation of the result set, where {} indicates a set of values, and [] a list of values
toString() - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedQueryToken
 
toString() - Method in class uk.ac.ic.doc.automed.tml.TML
 
toString() - Method in class uk.ac.ic.doc.automed.gui.GraphicSchemaObject
 
toString() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
toString() - Method in class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
 
toString() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPairRelationship
 
toString() - Method in class uk.ac.ic.doc.automed.matching.SchemaElementPair
 
toString() - Method in class uk.ac.ic.doc.automed.matching.SchemaElement
 
toString() - Method in class uk.ac.ic.doc.automed.matching.Instance
 
toString() - Method in class uk.ac.ic.doc.automed.matching.BidirectionalDegree
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Subsumption
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.SemanticRelationship
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Overlapness
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Incompatibility
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Equivalence
 
toString() - Method in class uk.ac.ic.doc.automed.matching.relationships.Disjointness
 
toString() - Method in class uk.ac.ic.doc.automed.matching.modules.ElementVectorRepresentation
 
toString() - Method in class uk.ac.ic.doc.automed.matching.modules.Cluster
 
toString(StringBuffer) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedTuple
Produce a string representation of the result set, where {} indicates a set of values, and [] a list of values
toString(StringBuffer) - Method in class uk.ac.ic.doc.automed.wrappers.AutoMedResult
Produce a string representation of the result set in a StringBuffer.
toTree() - Method in class uk.ac.bbk.dcs.automed.graph.Forest
This method adds a generic root node to the forest and adds the trees' roots as children to the generic root node.
TRAN_ACTION_ADD - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "add"
TRAN_ACTION_CONTRACT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "contract"
TRAN_ACTION_DELETE - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "delete"
TRAN_ACTION_EXTEND - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "extend"
TRAN_ACTION_IDENT - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "ident"
TRAN_ACTION_MAXIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
TRAN_ACTION_MINIMUM - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated.  
TRAN_ACTION_RENAME - Static variable in interface uk.ac.ic.doc.automed.Constants
Deprecated. Transformation action "rename"
TransactSQLWrapper - class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapper.
A lower level wrapper for the conforming to the AutoMed SQL high level wrapper for TransactSQL SQL databases.
TransactSQLWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapper
Generate a new wrapper instance from information held in the repository about how to access a data source.
TransactSQLWrapperFactory - class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapperFactory.
A lower level wrapper factory for TransactSQL databases (i.e.
TransactSQLWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.TransactSQLWrapperFactory
 
transARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
transform(boolean, boolean) - Method in class uk.ac.bbk.dcs.automed.xml.XMLTransformer
Creates the transformation pathway from the source to the target schema.
transformation - Static variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
Transformation - class uk.ac.ic.doc.automed.reps.Transformation.
The Transformation class describes a single premitive transformation that connects a pair of schemas.
TRANSFORMATION_ADDED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
TRANSFORMATION_REMOVED - Static variable in class uk.ac.ic.doc.automed.reps.SchemaChangeEvent
 
Transformation(int, int, int, int, int, String, String, boolean) - Constructor for class uk.ac.ic.doc.automed.reps.Transformation
Instantiates a transformation.
transformationAdded(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
transformationAdded(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
TransformationArgumentDefinition - class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition.
The class used to define a template transformation's arguments.
TransformationArgumentDefinition(int, int, String, boolean, int, int, int, int) - Constructor for class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
 
TransformationArgumentDefinition(int, int, String, String, String, boolean) - Constructor for class uk.ac.ic.doc.automed.templates.TransformationArgumentDefinition
Constructs a new TransformationArgumentDefinition.
transformationRemoved(SchemaChangeEvent) - Method in interface uk.ac.ic.doc.automed.reps.SchemaChangeListener
 
transformationRemoved(SchemaChangeEvent) - Method in class uk.ac.ic.doc.automed.editor.Gui.EditorFrame
 
transformationsScroller - Variable in class uk.ac.ic.doc.automed.templates.gui.SchemaFrame
 
transidExistsInCompositeTransformationExecution(int) - Static method in class uk.ac.ic.doc.automed.TemplateExecutionRepository
Returns false if the specified transformation is not found in the execution table, true otherwise.
transIds - Variable in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
translateToQueryText(StringBuffer) - Method in class uk.ac.ic.doc.automed.wrappers.SQLQuery
Insert into a StringBuffer the text equivalent of this SQLQuery.
Translator - class uk.ac.bbk.dcs.automed.wrappers.Translator.
 
Translator() - Constructor for class uk.ac.bbk.dcs.automed.wrappers.Translator
 
tree - Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
treeModel - Variable in class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree
 
TreeNode - class uk.ac.bbk.dcs.automed.graph.TreeNode.
Class that abstracts the node of a tree structure.
TreeNode(String) - Constructor for class uk.ac.bbk.dcs.automed.graph.TreeNode
 
tryToUpdateArgumentWithInputValues() - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
tryToUpdateArgumentWithInputValues(String[]) - Method in class uk.ac.ic.doc.automed.templates.gui.InputForm
 
TStatement - class uk.ac.ic.doc.automed.templates.wrapper.TStatement.
 
TStatement() - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
TStatementArgument - class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument.
 
TStatementArgument(TStatement, TemplateArgumentSequence, int) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
TStatementArgument(TType, TStatement, TemplateArgumentSequence, int) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TStatementArgument
 
TTemplate - class uk.ac.ic.doc.automed.templates.wrapper.TTemplate.
 
TTemplate(String) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
TTemplate(String, boolean) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
TTemplate(String, String) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
TTemplate(String, String, boolean) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
TTemplateArgument - class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument.
 
TTemplateArgument(int, String, TStatementArgument) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
TTemplateArgument(int, String, TType, boolean) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TTemplateArgument
 
TTemplateInputArgument - class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument.
 
TTemplateInputArgument(int, int) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
TTemplateInputArgumentList - class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList.
 
TTemplateInputArgumentList(CompositeTransformation) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
TTemplateInputArgumentList(int) - Constructor for class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
TUPLE - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedType
Type to represent a tuple of atomic types
tx - Variable in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
ty - Variable in class uk.ac.ic.doc.automed.editor.DefaultDrawLinkNodalVertex
 
type - Variable in class uk.ac.ic.doc.automed.reps.Syntax.Token
 
TYPE_ALTERNATION - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated. see Construct.CLASS_ALTERNATION
TYPE_CONSTRUCT - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme type of construct scheme
TYPE_MAXIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
TYPE_MINIMUM - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
 
TYPE_NAME - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Scheme type of construct scheme
TYPE_SEQUENCE - Static variable in class uk.ac.ic.doc.automed.reps.Scheme
Deprecated. see Construct.CLASS_SEQUENCE
type() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the type
type() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Edge
Get the edge type
TypeConstraints - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TypeConstraintsList - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TypeFunction - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TypeFunctionList - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TypeItem - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TypeList - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TypeMismatchException - exception uk.ac.ic.doc.automed.reps.TypeMismatchException.
The class of exceptions generated by the uk.ac.ic.doc.automed.reps package.
TypeMismatchException(String) - Constructor for class uk.ac.ic.doc.automed.reps.TypeMismatchException
 
TypeName - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TypeNameList - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TypeObject - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TypeObjectList - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TypeString - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
TypeStringList - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 

U

UIDGetAttNameFromAttUID(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
UIDGetElementName(Node) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
UIDGetElementName(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
UIDGetElementNameFromAttUID(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
UIDGetSchemaUIDFromInstanceUID(Node) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
UIDGetSchemaUIDFromInstanceUID(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
UIDRemoveSchemaName(Node) - Method in class uk.ac.bbk.dcs.automed.xml.XMLTransformer
 
UIDRemoveSchemaName(Node) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
UIDRemoveSchemaName(String) - Method in class uk.ac.bbk.dcs.automed.xml.XMLTransformer
 
UIDRemoveSchemaName(String) - Method in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
uk.ac.bbk.dcs.automed.graph - package uk.ac.bbk.dcs.automed.graph
 
uk.ac.bbk.dcs.automed.hdmstore - package uk.ac.bbk.dcs.automed.hdmstore
 
uk.ac.bbk.dcs.automed.qproc - package uk.ac.bbk.dcs.automed.qproc
 
uk.ac.bbk.dcs.automed.qproc.functions - package uk.ac.bbk.dcs.automed.qproc.functions
 
uk.ac.bbk.dcs.automed.qproc.optimise - package uk.ac.bbk.dcs.automed.qproc.optimise
 
uk.ac.bbk.dcs.automed.wrappers - package uk.ac.bbk.dcs.automed.wrappers
 
uk.ac.bbk.dcs.automed.xml - package uk.ac.bbk.dcs.automed.xml
 
uk.ac.bbk.dcs.automed.xml.wrappers - package uk.ac.bbk.dcs.automed.xml.wrappers
 
uk.ac.ic.doc.automed - package uk.ac.ic.doc.automed
 
uk.ac.ic.doc.automed.editor - package uk.ac.ic.doc.automed.editor
 
uk.ac.ic.doc.automed.editor.drawables - package uk.ac.ic.doc.automed.editor.drawables
 
uk.ac.ic.doc.automed.gui - package uk.ac.ic.doc.automed.gui
 
uk.ac.ic.doc.automed.matching - package uk.ac.ic.doc.automed.matching
 
uk.ac.ic.doc.automed.matching.modules - package uk.ac.ic.doc.automed.matching.modules
 
uk.ac.ic.doc.automed.matching.relationships - package uk.ac.ic.doc.automed.matching.relationships
 
uk.ac.ic.doc.automed.reps - package uk.ac.ic.doc.automed.reps
 
uk.ac.ic.doc.automed.ssd - package uk.ac.ic.doc.automed.ssd
 
uk.ac.ic.doc.automed.templates - package uk.ac.ic.doc.automed.templates
 
uk.ac.ic.doc.automed.templates.gui - package uk.ac.ic.doc.automed.templates.gui
 
uk.ac.ic.doc.automed.templates.wrapper - package uk.ac.ic.doc.automed.templates.wrapper
 
uk.ac.ic.doc.automed.tml - package uk.ac.ic.doc.automed.tml
 
uk.ac.ic.doc.automed.wrappers - package uk.ac.ic.doc.automed.wrappers
 
uk.ac.ic.doc.automed.wrappers.ssdfunctions - package uk.ac.ic.doc.automed.wrappers.ssdfunctions
 
UNARY_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
 
UnexpectedTokenException - exception uk.ac.ic.doc.automed.reps.UnexpectedTokenException.
Deprecated. Use SyntaxException instead
UnexpectedTokenException - exception uk.ac.ic.doc.automed.editor.UnexpectedTokenException.
 
UnexpectedTokenException(int, int, int, Syntax.Token) - Constructor for class uk.ac.ic.doc.automed.reps.UnexpectedTokenException
Deprecated.  
UnexpectedTokenException(int, int, int, Syntax.Token) - Constructor for class uk.ac.ic.doc.automed.editor.UnexpectedTokenException
 
UnexpectedTokenException(int, int, Syntax.Token) - Constructor for class uk.ac.ic.doc.automed.reps.UnexpectedTokenException
Deprecated.  
UnexpectedTokenException(int, int, Syntax.Token) - Constructor for class uk.ac.ic.doc.automed.editor.UnexpectedTokenException
 
UnexpectedTokenException(String) - Constructor for class uk.ac.ic.doc.automed.reps.UnexpectedTokenException
Deprecated.  
unFinalise() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgument
 
UninstantiatedElementException - exception uk.ac.ic.doc.automed.matching.UninstantiatedElementException.
 
UninstantiatedElementException() - Constructor for class uk.ac.ic.doc.automed.matching.UninstantiatedElementException
 
UninstantiatedElementException(String) - Constructor for class uk.ac.ic.doc.automed.matching.UninstantiatedElementException
 
UninstantiatedException - exception uk.ac.ic.doc.automed.matching.UninstantiatedException.
 
UninstantiatedException() - Constructor for class uk.ac.ic.doc.automed.matching.UninstantiatedException
 
UninstantiatedException(String) - Constructor for class uk.ac.ic.doc.automed.matching.UninstantiatedException
 
UninstantiatedException(String, Throwable) - Constructor for class uk.ac.ic.doc.automed.matching.UninstantiatedException
 
union(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an Schema (su) containing the union of SchemaObjects in this schema (s1) and the schema passed as a parameter (s2).
unionByName(Schema) - Method in class uk.ac.ic.doc.automed.reps.Schema
Return an SchemaObject array containing the union by name between this schema (s1) and the schema passed as a parameter (s2).
unvisit() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
Marks the calling node as unvisited
UPDATE - Static variable in class uk.ac.ic.doc.automed.IntegrityException
Exception caused by an operation doing some sort of update on an exisinting object in the repository.
updateCanvas() - Method in class uk.ac.ic.doc.automed.gui.SchemaCanvas
 
updateFields() - Method in class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool
 
updateFields() - Method in class uk.ac.ic.doc.automed.editor.GUITool
 
updateFields() - Method in class uk.ac.ic.doc.automed.editor.ReportException
 
updateFields() - Method in class uk.ac.ic.doc.automed.editor.MatchingTool
 
updateRepository() - Method in class uk.ac.ic.doc.automed.templates.wrapper.CreateListStatement
 
updateRepository() - Method in class uk.ac.ic.doc.automed.templates.wrapper.SchemeListStatement
 
updateRepository() - Method in class uk.ac.ic.doc.automed.templates.wrapper.IndexListStatement
 
updateRepository() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TStatement
 
updateRepository() - Method in class uk.ac.ic.doc.automed.templates.wrapper.RenameStatement
 
updateRepository() - Method in class uk.ac.ic.doc.automed.templates.wrapper.RemovingStatement
 
updateRepository() - Method in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
updateRepository() - Method in class uk.ac.ic.doc.automed.templates.wrapper.ForeachStatement
 
updateRepository() - Method in class uk.ac.ic.doc.automed.templates.wrapper.DefineStringStatement
 
updateRepositoryWithRuntimeArguments() - Method in class uk.ac.ic.doc.automed.templates.wrapper.TTemplateInputArgumentList
 
updateSchemaObjectNameHashMap() - Method in class uk.ac.ic.doc.automed.reps.Schema
Update this Schema's hashmap of how each SchemaObject in the schema is named.
updateSSDPatterns() - Method in class uk.ac.ic.doc.automed.ssd.SSDFormat
 
upperBound - Static variable in class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
 
url - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
usage() - Static method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreCmd
Show the useage message
use(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmStore
Use the named HDM store - subsequent calls to this HdmStore will use this store as default
UserAction - class uk.ac.ic.doc.automed.editor.UserAction.
 
UserAction() - Constructor for class uk.ac.ic.doc.automed.editor.UserAction
 
UserActionClass - class uk.ac.ic.doc.automed.editor.UserActionClass.
 
UserActionClass(Action) - Constructor for class uk.ac.ic.doc.automed.editor.UserActionClass
 
UserActionResult - class uk.ac.ic.doc.automed.editor.UserActionResult.
 
UserActionResult() - Constructor for class uk.ac.ic.doc.automed.editor.UserActionResult
 
username - Variable in class uk.ac.ic.doc.automed.wrappers.AutoMedWrapper
 
userName - Static variable in class uk.ac.ic.doc.automed.MDR
 
Util - class uk.ac.ic.doc.automed.Util.
 
Util - class uk.ac.ic.doc.automed.matching.Util.
 
Util() - Constructor for class uk.ac.ic.doc.automed.Util
 
Util() - Constructor for class uk.ac.ic.doc.automed.matching.Util
 
Utilities - class uk.ac.bbk.dcs.automed.qproc.functions.Utilities.
 
Utilities() - Constructor for class uk.ac.bbk.dcs.automed.qproc.functions.Utilities
 
Utility - class uk.ac.ic.doc.automed.reps.Utility.
Class offering utility methods for accessing a SchemaObject's scheme.
Utility() - Constructor for class uk.ac.ic.doc.automed.reps.Utility
 

V

VALIDATING - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
A feature stating whether the parser of the XML file should validate the file against the accompanying XML Schema/DTD.
validQuery(ASG) - Method in class uk.ac.bbk.dcs.automed.hdmstore.HdmWrapper
check that the given ASG is a valid query
value - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.CONSTRAINTS
 
value - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator.FUNCTION
 
VALUE_CLASS - Static variable in class uk.ac.ic.doc.automed.wrappers.AutoMedQuery
A class of token that represents an atomic value in an expression
value() - Method in class uk.ac.bbk.dcs.automed.hdmstore.Span
Get the value
valueARG - Variable in class uk.ac.ic.doc.automed.templates.wrapper.InsertingStatement
 
valueChanged(ListSelectionEvent) - Method in class uk.ac.ic.doc.automed.gui.SchemaTool
 
valueChanged(ListSelectionEvent) - Method in class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher
 
variable - Static variable in class uk.ac.bbk.dcs.automed.qproc.Cell
 
VARIABLE_PREFIX - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
VARIES_WITH(TemplateCompilerSimulator.NAME) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
VARIES_WITH(TemplateCompilerSimulator.NAMELIST) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
VARIES_WITH(TemplateCompilerSimulator.OBJECT) - Method in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 
VarToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.QSym
 
VarToken - Static variable in class uk.ac.bbk.dcs.automed.qproc.EnvSym
 
Vectors - class uk.ac.ic.doc.automed.matching.modules.Vectors.
 
Vectors(List) - Constructor for class uk.ac.ic.doc.automed.matching.modules.Vectors
 
VERBOSE - Static variable in class uk.ac.bbk.dcs.automed.hdmstore.Debug
 
VERTICAL_EXT - Static variable in class uk.ac.ic.doc.automed.gui.Rhombus
 
viewmap - Variable in class uk.ac.bbk.dcs.automed.qproc.QueryReformulator
 
visited() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
Marks the calling node as visited.
voidQuery() - Static method in class uk.ac.bbk.dcs.automed.qproc.ASG
Returns the ASG representation of the query Void.

W

waffle(String) - Method in class uk.ac.bbk.dcs.automed.hdmstore.Debug
Write a verbose level message
wasExecuted - Variable in class uk.ac.ic.doc.automed.templates.wrapper.TTemplate
 
wasVisited() - Method in class uk.ac.bbk.dcs.automed.graph.DirectedGraphNode
 
weakHeadNF(ASG) - Method in class uk.ac.bbk.dcs.automed.qproc.Evaluator
Evaluates g to weak head normal form.
weakHeadNF(Cell) - Method in class uk.ac.bbk.dcs.automed.qproc.Evaluator
Analogous to the above.
WHERE - Static variable in class uk.ac.ic.doc.automed.wrappers.SQLQuery
The only field should contain a logical operator or a comparison
WHITESPACE_COLLAPSE - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
A feature stating that after the processing implied by replace, contiguous sequences of #x20's are collapsed to a single #x20, and leading and trailing #x20's are removed.
WHITESPACE_REPLACE - Static variable in class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
A feature stating that all occurrences of #x9 (tab), #xA (line feed) and #xD (carriage return) are replaced with #x20 (space).
window - Variable in class uk.ac.ic.doc.automed.editor.GUITool
 
wLayout - Variable in class uk.ac.ic.doc.automed.editor.GUITool
 
write() - Method in class uk.ac.ic.doc.automed.reps.Pathway
 
write() - Method in class uk.ac.ic.doc.automed.reps.Schema
Write to the standard out a text representation of this Schema object, in a form suitable for human interpretation, and suitable for being used as the input to #read()
write() - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Model
 
write(OutputStream) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.SchemaObject
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Construct
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Schema
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.ConstructScheme
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Model
 
write(PrintWriter) - Method in class uk.ac.ic.doc.automed.reps.Transformation
 
writeDOM(Document, String) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Serializes the input DOM representation into file "fileName" in path "filePath".
writeDOM(Document, String, String) - Static method in class uk.ac.bbk.dcs.automed.xml.NodeUtility
Serializes the input DOM representation into file "fileName" in path "filePath".
writeSimilarSchemaElementPairs(String, SimilarSchemaElementPair[]) - Static method in class uk.ac.ic.doc.automed.matching.SimilarSchemaElementPair
 
writeToRepository() - Method in class uk.ac.ic.doc.automed.tml.TempPathway
 
writeToRepository(boolean) - Method in class uk.ac.ic.doc.automed.tml.TempPathway
Write an optimised pathway to the repository
WRITTING_CODE - Static variable in class uk.ac.ic.doc.automed.templates.wrapper.TemplateCompilerSimulator
 

X

xInset - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
XMLConstants - class uk.ac.bbk.dcs.automed.xml.XMLConstants.
 
XMLConstants() - Constructor for class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
XMLDSSDOM - class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOM.
The XMLDataSourceSchema class represents the DataSource Schema of an XML file using DOM.
XMLDSSDOM(DOMWrapper, DOMWrapperFactory) - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSDOM
 
XMLDSSSAX - class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX.
The XMLDataSourceSchema class represents the DataSource Schema of an XML file using SAX.
XMLDSSSAX(SAXWrapper, SAXWrapperFactory) - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.XMLDSSSAX
 
XMLException - exception uk.ac.bbk.dcs.automed.xml.XMLException.
An exception relating to the XML package.
XMLException(String) - Constructor for class uk.ac.bbk.dcs.automed.xml.XMLException
 
XMLException(String, Exception) - Constructor for class uk.ac.bbk.dcs.automed.xml.XMLException
Creates an XMLException when it is acting as a wrapper for other Exceptions.
xmlExtension - Static variable in class uk.ac.bbk.dcs.automed.xml.XMLConstants
 
XMLModel - class uk.ac.bbk.dcs.automed.xml.XMLModel.
Defines the AutoMed XML Model
XMLModel() - Constructor for class uk.ac.bbk.dcs.automed.xml.XMLModel
Creates the XML Model in the AutoMed Repository (MDR).
XMLNotFoundException - exception uk.ac.bbk.dcs.automed.xml.XMLNotFoundException.
An exception relating to something not found in an XML context.
XMLNotFoundException(String) - Constructor for class uk.ac.bbk.dcs.automed.xml.XMLNotFoundException
 
XMLNotFoundException(String, Exception) - Constructor for class uk.ac.bbk.dcs.automed.xml.XMLNotFoundException
Creates an XMLNotFoundException when it is acting as a wrapper for other Exceptions.
XMLTransformer - class uk.ac.bbk.dcs.automed.xml.XMLTransformer.
Class that automatically integrates two AutoMed XML DataSource Schemas.
XMLTransformer(Schema, Document, Schema, Document, boolean) - Constructor for class uk.ac.bbk.dcs.automed.xml.XMLTransformer
 
XMLWrapper - class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper.
XMLWrapper class is a wrapper class for the AutoMed Repository.
XMLWrapper() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapper
 
XMLWrapperFactory - class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory.
XMLWrapperFactory class.
XMLWrapperFactory() - Constructor for class uk.ac.bbk.dcs.automed.xml.wrappers.XMLWrapperFactory
Creates a new XMLWrapperFactory and sets the model name.
xPos - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 

Y

YATTA_MODEL_ROOTNODE - Static variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
YATTA_MODEL_ROOTORYATTA - Static variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
YATTA_MODEL_SEQUENCE - Static variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
YATTA_MODEL_YATTANODE - Static variable in class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
YattaDrawLinkNodalLink - class uk.ac.ic.doc.automed.editor.drawables.YattaDrawLinkNodalLink.
 
YattaDrawLinkNodalLink(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.YattaDrawLinkNodalLink
 
YattaDrawSequence - class uk.ac.ic.doc.automed.editor.drawables.YattaDrawSequence.
 
YattaDrawSequence(EditorPanel, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.YattaDrawSequence
 
YattaDrawSequence(EditorPanel, Positionable, Positionable[]) - Constructor for class uk.ac.ic.doc.automed.editor.drawables.YattaDrawSequence
 
YattaQuery - class uk.ac.ic.doc.automed.wrappers.YattaQuery.
 
YattaQuery(Object[], String) - Constructor for class uk.ac.ic.doc.automed.wrappers.YattaQuery
 
YattaQueryResult - class uk.ac.ic.doc.automed.wrappers.YattaQueryResult.
 
YattaQueryResult(int) - Constructor for class uk.ac.ic.doc.automed.wrappers.YattaQueryResult
 
YattaWrapper - class uk.ac.ic.doc.automed.wrappers.YattaWrapper.
A YATTA wrapper for semistructured data source.
YattaWrapper(AccessMethod, String) - Constructor for class uk.ac.ic.doc.automed.wrappers.YattaWrapper
 
YattaWrapperFactory - class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory.
A YattaWrapperFactory class able to produce YattaWrapper instances, together with any data (schema, ssdformat, etc.) that the wrapper requires to be present in the repository.
YattaWrapperFactory() - Constructor for class uk.ac.ic.doc.automed.wrappers.YattaWrapperFactory
 
yInset - Static variable in class uk.ac.ic.doc.automed.editor.DrawVertex
 
yPos - Variable in class uk.ac.ic.doc.automed.templates.gui.DrawingObject
 

_

_action_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.EnvParser
Parse-action table.
_action_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.QParser
Parse-action table.
_production_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.EnvParser
Production table.
_production_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.QParser
Production table.
_reduce_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.EnvParser
reduce_goto table.
_reduce_table - Static variable in class uk.ac.bbk.dcs.automed.qproc.QParser
reduce_goto table.

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