Serialized Form

Package uk.ac.ic.doc.automed

Class uk.ac.ic.doc.automed.AutoMedException implements Serializable

Class uk.ac.ic.doc.automed.DataSourceRepositoryException implements Serializable

Class uk.ac.ic.doc.automed.DSRException implements Serializable

Class uk.ac.ic.doc.automed.InconsistentException implements Serializable

Class uk.ac.ic.doc.automed.IntegrityException implements Serializable

Serialized Fields

className

java.lang.String className

operation

int operation

objectID

int objectID

objectID2

int objectID2

Class uk.ac.ic.doc.automed.MDRException implements Serializable

Class uk.ac.ic.doc.automed.ModelDefinitionsRepositoryException implements Serializable

Class uk.ac.ic.doc.automed.NotFoundException implements Serializable

Class uk.ac.ic.doc.automed.NotImplementedException implements Serializable

Class uk.ac.ic.doc.automed.RepositoryAccessException implements Serializable

Serialized Fields

cause

java.lang.Exception cause

Class uk.ac.ic.doc.automed.SchemaModelingRepositoryException implements Serializable

Class uk.ac.ic.doc.automed.SchemaTransformationRepositoryException implements Serializable

Class uk.ac.ic.doc.automed.SSMDRException implements Serializable

Class uk.ac.ic.doc.automed.STRException implements Serializable

Class uk.ac.ic.doc.automed.TemplateExecutionRepositoryException implements Serializable

Class uk.ac.ic.doc.automed.TemplateTransformationRepositoryException implements Serializable

Class uk.ac.ic.doc.automed.TemplateTransformationSyntaxRepositoryException implements Serializable

Package uk.ac.ic.doc.automed.reps

Class uk.ac.ic.doc.automed.reps.AutoRepException implements Serializable

Serialized Fields

cause

java.lang.Exception cause

Class uk.ac.ic.doc.automed.reps.BadSchemaException implements Serializable

Serialized Fields

badSchema

Schema badSchema

Class uk.ac.ic.doc.automed.reps.ConstructSchemeSyntaxException implements Serializable

Class uk.ac.ic.doc.automed.reps.IllegalOperationException implements Serializable

Class uk.ac.ic.doc.automed.reps.SchemasNotIdenticalException implements Serializable

Serialized Fields

fromSchema

Schema fromSchema

toSchema

Schema toSchema

fromObjects

SchemaObject[] fromObjects

toObjects

SchemaObject[] toObjects

Class uk.ac.ic.doc.automed.reps.SyntaxException implements Serializable

Class uk.ac.ic.doc.automed.reps.TypeMismatchException implements Serializable

Class uk.ac.ic.doc.automed.reps.UnexpectedTokenException implements Serializable

Package uk.ac.ic.doc.automed.editor

Class uk.ac.ic.doc.automed.editor.CommandLineException implements Serializable

Class uk.ac.ic.doc.automed.editor.ConfigException implements Serializable

Class uk.ac.ic.doc.automed.editor.EditorException implements Serializable

Class uk.ac.ic.doc.automed.editor.EditorPanel implements Serializable

Serialized Fields

vertexComponent

java.util.Map vertexComponent

adjacents

java.util.Map adjacents

vertices

java.util.Map vertices

edges

java.util.Map edges

selectOffset

int selectOffset

dragging

boolean dragging

justActivated

boolean justActivated

fm

java.awt.FontMetrics fm

ef

Gui.EditorFrame ef

Class uk.ac.ic.doc.automed.editor.Gui implements Serializable

Serialized Fields

ep

Gui.EditorFrame ep

editorFrames

java.util.Map editorFrames

rootActions

java.util.List rootActions

networkActions

java.util.List networkActions

schemaActions

java.util.List schemaActions

objectActions

java.util.List objectActions

selected

java.util.List selected

pathSel

boolean[] pathSel

Class uk.ac.ic.doc.automed.editor.Gui.EditorFrame implements Serializable

Serialized Fields

rootPane

javax.swing.JRootPane rootPane

contentPane

java.awt.Container contentPane

glassPane

java.awt.Component glassPane

editorPanel

EditorPanel editorPanel

target

java.lang.Object target

parentTarget

java.lang.Object parentTarget

selected

java.util.List selected

pathSel

boolean[] pathSel

rootActions

java.util.List rootActions

networkActions

java.util.List networkActions

schemaActions

java.util.List schemaActions

objectActions

java.util.List objectActions

rootMenu

javax.swing.JPopupMenu rootMenu

networkMenu

javax.swing.JPopupMenu networkMenu

schemaMenu

javax.swing.JPopupMenu schemaMenu

objectMenu

javax.swing.JPopupMenu objectMenu

Class uk.ac.ic.doc.automed.editor.GUITool implements Serializable

Serialized Fields

window

java.awt.Container window

wLayout

java.awt.GridBagLayout wLayout

line

int line

Class uk.ac.ic.doc.automed.editor.MatchingTool implements Serializable

Serialized Fields

elementsTables1

java.util.ArrayList elementsTables1

elementsColumns1

java.util.ArrayList elementsColumns1

elementsColumnEdges1

java.util.ArrayList elementsColumnEdges1

elementsTables2

java.util.ArrayList elementsTables2

elementsColumns2

java.util.ArrayList elementsColumns2

elementsColumnEdges2

java.util.ArrayList elementsColumnEdges2

discoveredRels

SchemaElementPairRelationship[] discoveredRels

validatedRels

java.util.ArrayList validatedRels

schemas

Schema[] schemas

integratedSchema

Schema integratedSchema

precisionRels

java.util.ArrayList precisionRels

numofinstancesRels

java.util.ArrayList numofinstancesRels

existenceRels

java.util.ArrayList existenceRels

model

MatchingTool.MyTableModel model

jtable

javax.swing.JTable jtable

validateItem

javax.swing.JMenuItem validateItem

exitItem

javax.swing.JMenuItem exitItem

outputTextArea

javax.swing.JTextArea outputTextArea

comboBoxRenderer

MatchingTool.ComboBoxRenderer comboBoxRenderer

renderer

MatchingTool.MyDefaultTableCellRenderer renderer

results

javax.swing.JTabbedPane results

waitCursor

java.awt.Cursor waitCursor

normalCursor

java.awt.Cursor normalCursor

STOP

boolean STOP

RELATIONSHIPS_DISCOVERED

boolean RELATIONSHIPS_DISCOVERED

SCHEMAS_INTEGRATED

boolean SCHEMAS_INTEGRATED

Class uk.ac.ic.doc.automed.editor.PathwayOptimiserTool implements Serializable

Serialized Fields

transTable

javax.swing.JTable transTable

option1

javax.swing.JButton option1

option2

javax.swing.JButton option2

cancelButton

javax.swing.JButton cancelButton

tempP

TempPathway tempP

pathwayIsOptimisable

boolean pathwayIsOptimisable

pathwayIsWellformed

boolean pathwayIsWellformed

notWellformedMsg

java.lang.String notWellformedMsg

Class uk.ac.ic.doc.automed.editor.PatternWritingTool implements Serializable

Serialized Fields

yatta

Model yatta

rootnode

Construct rootnode

yattanode

Construct yattanode

sequence

Construct sequence

ROOT_CONSTRUCT

java.lang.String ROOT_CONSTRUCT

YATTANODE_CONSTRUCT

java.lang.String YATTANODE_CONSTRUCT

SEQUENCE_CONSTRUCT

java.lang.String SEQUENCE_CONSTRUCT

windowname

java.lang.String windowname

gbLayout

java.awt.GridBagLayout gbLayout

ssdText

javax.swing.JTextArea ssdText

ssdfText

javax.swing.JTextField ssdfText

parentCombo

javax.swing.JComboBox parentCombo

sobjName

javax.swing.JTextField sobjName

typeText

javax.swing.JTextField typeText

orderCombo

javax.swing.JComboBox orderCombo

fullScheme

javax.swing.JTextArea fullScheme

sequenceInfo

javax.swing.JTextArea sequenceInfo

sobjText

javax.swing.JTextArea sobjText

pnameText

javax.swing.JTextField pnameText

patternText

javax.swing.JTextField patternText

groupText

javax.swing.JTextField groupText

addButton1

javax.swing.JButton addButton1

removeButton1

javax.swing.JButton removeButton1

addButton

javax.swing.JButton addButton

removeButton

javax.swing.JButton removeButton

editButton

javax.swing.JButton editButton

helpButton

javax.swing.JButton helpButton

matchButton

javax.swing.JButton matchButton

browseButton

javax.swing.JButton browseButton

saveButton

javax.swing.JButton saveButton

cancelButton

javax.swing.JButton cancelButton

nextWindow

javax.swing.JButton nextWindow

complex

javax.swing.JRadioButton complex

atomic

javax.swing.JRadioButton atomic

one

javax.swing.JRadioButton one

onezero

javax.swing.JRadioButton onezero

gtone

javax.swing.JRadioButton gtone

gtzero

javax.swing.JRadioButton gtzero

ctype

java.lang.String[] ctype

complexList

javax.swing.JComboBox complexList

atype

java.lang.String[] atype

atomicList

javax.swing.JComboBox atomicList

any

javax.swing.JRadioButton any

before

javax.swing.JRadioButton before

after

javax.swing.JRadioButton after

key

javax.swing.JRadioButton key

nonkey

javax.swing.JRadioButton nonkey

treePanel

PatternWritingTool.DynamicTree treePanel

name_node

java.util.HashMap name_node

treePanelPW

PatternWritingTool.DynamicTree treePanelPW

fullN_keyN

java.util.HashMap fullN_keyN

ssdModel

PatternWritingTool.MyTableModel ssdModel

ssdTable

javax.swing.JTable ssdTable

ssdrowCount

int ssdrowCount

selectedRow

int selectedRow

ssd

java.lang.String ssd

url

java.lang.String url

schema

java.lang.String schema

selectedType

java.lang.String selectedType

selectedParent

java.lang.String selectedParent

parentType

java.lang.String parentType

selectedOrder

java.lang.String selectedOrder

selectedCard

java.lang.String selectedCard

selectedKey

java.lang.String selectedKey

selectedSequence

java.lang.String selectedSequence

s

Schema s

sobj

SchemaObject sobj

ssdf

SSDFormat ssdf

ssdfName

java.lang.String ssdfName

SOS

java.util.Vector SOS

SPS

java.util.Vector SPS

node_background_colour

java.awt.Color node_background_colour

root_background_colour

java.awt.Color root_background_colour

seq_background_colour

java.awt.Color seq_background_colour

text_colour

java.awt.Color text_colour

text_background_colour

java.awt.Color text_background_colour

orderedParent

java.util.Vector orderedParent

pname

java.lang.String pname

pattern

java.lang.String pattern

myHighlightPainter

javax.swing.text.Highlighter.HighlightPainter myHighlightPainter

basePainter

javax.swing.text.Highlighter.HighlightPainter basePainter

Class uk.ac.ic.doc.automed.editor.PatternWritingTool.DynamicTree implements Serializable

Serialized Fields

rootNode

javax.swing.tree.DefaultMutableTreeNode rootNode

treeModel

javax.swing.tree.DefaultTreeModel treeModel

tree

javax.swing.JTree tree

toolkit

java.awt.Toolkit toolkit

Class uk.ac.ic.doc.automed.editor.ReportException implements Serializable

Serialized Fields

e

java.lang.Exception e

msgText

java.lang.String msgText

msg

javax.swing.JTextArea msg

summary

javax.swing.JTextArea summary

details

javax.swing.JTextArea details

ste

java.lang.StackTraceElement[] ste

Class uk.ac.ic.doc.automed.editor.SemanticException implements Serializable

Class uk.ac.ic.doc.automed.editor.SyntaxException implements Serializable

Class uk.ac.ic.doc.automed.editor.UnexpectedTokenException implements Serializable

Class uk.ac.ic.doc.automed.editor.UserAction implements Serializable

Package uk.ac.bbk.dcs.automed.xml

Class uk.ac.bbk.dcs.automed.xml.XMLException implements Serializable

Class uk.ac.bbk.dcs.automed.xml.XMLNotFoundException implements Serializable

Package uk.ac.ic.doc.automed.wrappers

Class uk.ac.ic.doc.automed.wrappers.DataSourceException implements Serializable

Package uk.ac.ic.doc.automed.tml

Class uk.ac.ic.doc.automed.tml.NotOptimisableException implements Serializable

Package uk.ac.bbk.dcs.automed.qproc.functions

Class uk.ac.bbk.dcs.automed.qproc.functions.ModifiedArray implements Serializable

Package uk.ac.ic.doc.automed.gui

Class uk.ac.ic.doc.automed.gui.Arc implements Serializable

Serialized Fields

style

java.lang.String style

bgColour

java.lang.String bgColour

fgColour

java.lang.String fgColour

text

java.lang.String text

fontName

java.lang.String fontName

fontSize

int fontSize

fontStyle

int fontStyle

fontColour

java.lang.String fontColour

textLocation

java.lang.String textLocation

location

java.awt.Point location

arcWidth

int arcWidth

arcHeight

int arcHeight

startAngle

int startAngle

endAngle

int endAngle

graphics

java.awt.Graphics graphics

textPosition

java.awt.Point textPosition

font

java.awt.Font font

arc2d

java.awt.geom.Arc2D.Double arc2d

assigned

java.awt.Point assigned

west

java.awt.Point west

south

java.awt.Point south

north

java.awt.Point north

east

java.awt.Point east

Class uk.ac.ic.doc.automed.gui.ArgPane implements Serializable

Serialized Fields

argPane

ArgPane argPane

inputPane

javax.swing.JPanel inputPane

buttonsPane

javax.swing.JPanel buttonsPane

textField

javax.swing.JTextField textField

extend

javax.swing.JButton extend

leftArrow

javax.swing.JButton leftArrow

rightArrow

javax.swing.JButton rightArrow

contruct

javax.swing.JButton contruct

set

javax.swing.JButton set

argDescriptions

java.lang.String[] argDescriptions

argPos

int argPos

argValues

java.util.Vector argValues

extendable

boolean extendable

Class uk.ac.ic.doc.automed.gui.ArgumentsDialog implements Serializable

Serialized Fields

argPane

ArgPane argPane

Class uk.ac.ic.doc.automed.gui.Box implements Serializable

Serialized Fields

style

java.lang.String style

bgColour

java.lang.String bgColour

fgColour

java.lang.String fgColour

text

java.lang.String text

fontName

java.lang.String fontName

fontSize

int fontSize

fontStyle

int fontStyle

fontColour

java.lang.String fontColour

textLocation

java.lang.String textLocation

rounded

boolean rounded

arcWidth

int arcWidth

arcHeight

int arcHeight

layout

java.lang.String layout

layoutAxis

java.lang.String layoutAxis

graphics

java.awt.Graphics graphics

textPosition

java.awt.Point textPosition

font

java.awt.Font font

Class uk.ac.ic.doc.automed.gui.GUIException implements Serializable

Serialized Fields

cause

java.lang.Exception cause

Class uk.ac.ic.doc.automed.gui.IntegrateDialog implements Serializable

Serialized Fields

ok

javax.swing.JButton ok

cancel

javax.swing.JButton cancel

schema1

javax.swing.JTextField schema1

schema2

javax.swing.JTextField schema2

waitCursor

java.awt.Cursor waitCursor

defaultCursor

java.awt.Cursor defaultCursor

Class uk.ac.ic.doc.automed.gui.LoadDialog implements Serializable

Serialized Fields

list

javax.swing.JList list

value

java.lang.String value

cancelButton

javax.swing.JButton cancelButton

owner

java.awt.Component owner

Class uk.ac.ic.doc.automed.gui.Rhombus implements Serializable

Serialized Fields

style

java.lang.String style

bgColour

java.lang.String bgColour

fgColour

java.lang.String fgColour

text

java.lang.String text

fontName

java.lang.String fontName

fontSize

int fontSize

fontStyle

int fontStyle

fontColour

java.lang.String fontColour

textLocation

java.lang.String textLocation

extend

int extend

graphics

java.awt.Graphics graphics

textPosition

java.awt.Point textPosition

font

java.awt.Font font

polygon

java.awt.Polygon polygon

assigned

java.awt.Point assigned

Class uk.ac.ic.doc.automed.gui.SchemaCanvas implements Serializable

Serialized Fields

scrollpane

javax.swing.JScrollPane scrollpane

objectFocused

GraphicObject objectFocused

pointDifference

java.awt.Point pointDifference

manager

GraphicManager manager

tooltip

ToolTip tooltip

Class uk.ac.ic.doc.automed.gui.SchemaTool implements Serializable

Serialized Fields

leftCanvas

SchemaCanvas leftCanvas

rightCanvas

SchemaCanvas rightCanvas

load

javax.swing.JMenuItem load

exit

javax.swing.JMenuItem exit

integrate

javax.swing.JMenuItem integrate

loadDialog

LoadDialog loadDialog

compound

javax.swing.border.Border compound

left

javax.swing.JPanel left

right

javax.swing.JPanel right

list

javax.swing.JList list

optionPane

javax.swing.JOptionPane optionPane

infoDialog

javax.swing.JDialog infoDialog

integrateDialog

javax.swing.JDialog integrateDialog

execute

javax.swing.JButton execute

argDialog

ArgumentsDialog argDialog

transformation

CompositeTransformation transformation

waitCursor

java.awt.Cursor waitCursor

defaultCursor

java.awt.Cursor defaultCursor

argumentSequences

java.util.Vector argumentSequences

Class uk.ac.ic.doc.automed.gui.ToolTip implements Serializable

Serialized Fields

text

java.lang.String text

Package uk.ac.ic.doc.automed.templates.gui

Class uk.ac.ic.doc.automed.templates.gui.DrawingObject implements Serializable

Serialized Fields

cid

int cid

obid

int obid

highlighted

boolean highlighted

enabled

boolean enabled

xPos

int xPos

yPos

int yPos

name

java.lang.String name

nameDimensions

java.awt.Dimension nameDimensions

justDragged

boolean justDragged

parent

SchemaPanel parent

mySchemaObject

SchemaObject mySchemaObject

schemeObjects

SchemaObject[] schemeObjects

Class uk.ac.ic.doc.automed.templates.gui.InputForm implements Serializable

Serialized Fields

isEditable

boolean isEditable

isList

boolean isList

listSize

int listSize

inputItems

java.util.Vector inputItems

myArgument

TTemplateInputArgument myArgument

currentlyFocusedItem

InputItem currentlyFocusedItem

observer

java.awt.Component observer

dialogueManager

TemplateInputDialogue dialogueManager

topToolbars

javax.swing.JPanel topToolbars

popUpButton

javax.swing.JButton popUpButton

listButton

javax.swing.JButton listButton

singleButton

javax.swing.JButton singleButton

breakButton

javax.swing.JButton breakButton

isSetButton

javax.swing.JButton isSetButton

Class uk.ac.ic.doc.automed.templates.gui.LoadDialog implements Serializable

Serialized Fields

list

javax.swing.JList list

value

java.lang.String value

cancelButton

javax.swing.JButton cancelButton

owner

java.awt.Component owner

Class uk.ac.ic.doc.automed.templates.gui.SchemaFrame implements Serializable

Serialized Fields

load

javax.swing.JMenuItem load

execute

javax.swing.JMenuItem execute

exit

javax.swing.JMenuItem exit

backButton

javax.swing.JButton backButton

frontButton

javax.swing.JButton frontButton

executeButton

javax.swing.JButton executeButton

schemaPanelScroller

javax.swing.JScrollPane schemaPanelScroller

transformationsScroller

javax.swing.JScrollPane transformationsScroller

mainPanel

javax.swing.JPanel mainPanel

loadedSchemas

java.util.Vector loadedSchemas

panelsOfSchemas

java.util.Hashtable panelsOfSchemas

currentlyDisplayedSchema

int currentlyDisplayedSchema

Class uk.ac.ic.doc.automed.templates.gui.SchemaPanel implements Serializable

Serialized Fields

objects

java.util.Vector objects

currentSID

int currentSID

observer

java.awt.Component observer

schemaName

java.lang.String schemaName

dialogueManager

DialogueManager dialogueManager

objectMap

java.util.Hashtable objectMap

loadedSchema

Schema loadedSchema

Class uk.ac.ic.doc.automed.templates.gui.TemplateDialogueLauncher implements Serializable

Serialized Fields

owner

java.awt.Frame owner

list

javax.swing.JList list

listScroller

javax.swing.JScrollPane listScroller

descriptionScroller

javax.swing.JScrollPane descriptionScroller

descriptionPane

javax.swing.JTextPane descriptionPane

okButton

javax.swing.JButton okButton

cancelButton

javax.swing.JButton cancelButton

names

java.lang.String[] names

descriptions

java.util.Hashtable descriptions

transIds

java.util.Hashtable transIds

selectedTransId

java.lang.Integer selectedTransId

Package uk.ac.ic.doc.automed.templates.wrapper

Class uk.ac.ic.doc.automed.templates.wrapper.TemplateDefinitionException implements Serializable

Serialized Fields

cause

java.lang.Exception cause

Package uk.ac.bbk.dcs.automed.hdmstore

Class uk.ac.bbk.dcs.automed.hdmstore.HdmStoreException implements Serializable

Package uk.ac.ic.doc.automed.matching

Class uk.ac.ic.doc.automed.matching.IntegratorException implements Serializable

Class uk.ac.ic.doc.automed.matching.InvalidElementException implements Serializable

Class uk.ac.ic.doc.automed.matching.RelationshipConflictException implements Serializable

Class uk.ac.ic.doc.automed.matching.RelationshipExtractorException implements Serializable

Class uk.ac.ic.doc.automed.matching.UninstantiatedElementException implements Serializable

Class uk.ac.ic.doc.automed.matching.UninstantiatedException implements Serializable